Related Experiment Video
Updated: Jun 8, 2026

Measuring Nucleotide Binding to Intact, Functional Membrane Proteins in Real Time
Published on: March 11, 2021
Structural basis for the cAMP-dependent gating in the human HCN4 channel
Xinping Xu1, Zhanna V Vysotskaya, Qinglian Liu
1Department of Physiology and Biophysics, School of Medicine, Virginia Commonwealth University, Richmond, Virginia 23298, USA.
Insights
Researchers structurally and functionally characterized human HCN4 channels, revealing distinct cAMP-dependent gating compared to HCN2. This study provides insights into cardiac channel function and regulation.
Area of Science:
- Biophysics
- Molecular Biology
- Cardiovascular Physiology
Background:
- Hyperpolarization-activated cyclic nucleotide-gated (HCN) channels are crucial in the cardiovascular and central nervous systems.
- HCN4 is the predominant isoform in the human heart, and its cyclic adenosine monophosphate (cAMP)-dependent gating is key to cardiac function.
- Previous structural data on HCN channels focused on mouse HCN2 (mHCN2), leaving other mammalian isoforms understudied.
Purpose of the Study:
- To elucidate the structural and functional characteristics of the human HCN4 (hHCN4) channel's C-terminal region.
- To compare the cAMP-dependent gating mechanisms of hHCN4 with mHCN2.
- To identify structural determinants responsible for functional differences between HCN isoforms.
Main Methods:
- X-ray crystallography to determine the 2.4 Å structure of the hHCN4 C-terminal fragment.
- Biochemical assays to assess protein interactions and function.
- Electrophysiological recordings to analyze channel gating properties.
Main Results:
- The crystal structure of the hHCN4 C-terminal fragment showed high similarity to mHCN2.
- Functional analysis revealed hHCN4 exhibits a significantly reduced response to cAMP (approximately 3-fold lower) compared to mHCN2.
- Specific residues in the loop between β4 and β5 strands were identified as contributing to these isoform-specific cAMP responses.
- cAMP binding to hHCN4 induced a prolonged effect on channel deactivation.
Conclusions:
- The hHCN4 channel possesses unique cAMP-dependent gating properties distinct from mHCN2, despite structural similarities.
- The identified structural differences offer mechanistic insights into isoform-specific cAMP modulation.
- The prolonged deactivation effect of hHCN4 upon cAMP binding may have significant physiological implications for cardiac rhythm regulation.
Abstract:
Hyperpolarization-activated cAMP-regulated (HCN) channels play important physiological roles in both cardiovascular and central nervous systems. Among the four HCN isoforms, HCN2 and HCN4 show high expression levels in the human heart, with HCN4 being the major cardiac isoform. The previously published crystal structure of the mouse HCN2 (mHCN2) C-terminal fragment, including the C-linker and the cyclic-nucleotide binding domain (CNBD), has provided many insights into cAMP-dependent gating in HCN channels. However, structures of other mammalian HCN channel isoforms have been lacking. Here we used a combination of approaches including structural biology, biochemistry, and electrophysiology to study cAMP-dependent gating in HCN4 channel. First we solved the crystal structure of the C-terminal fragment of human HCN4 (hHCN4) channel at 2.4 Å. Overall we observed a high similarity between mHCN2 and hHCN4 crystal structures. Functional comparison between two isoforms revealed that compared with mHCN2, the hHCN4 protein exhibited marked different contributions to channel function, such as a ∼3-fold reduction in the response to cAMP. Guided by structural differences in the loop region between β4 and β5 strands, we identified residues that could partially account for the differences in response to cAMP between mHCN2 and hHCN4 proteins. Moreover, upon cAMP binding, the hHCN4 C-terminal protein exerts a much prolonged effect in channel deactivation that could have significant physiological contributions.
Related Concept Videos
Ligand-Gated Ion Channel Receptor: Gating Mechanism
Ligand-gated Ion Channels
Three Subfamilies of Ligand-gated Ion Channels
Ligand-gated ion channels fall into three subfamilies. The 'Cys-loop' includes the nicotinic acetylcholine receptors, γ-aminobutyric acid (GABA), glycine, and 5-hydroxytryptamine receptors. The second one is the 'Pore-loop' channels that include the...
Ligand-gated Ion Channels
Three Subfamilies of Ligand-gated Ion Channels
Ligand-gated ion channels fall into three subfamilies. The 'Cys-loop' includes the nicotinic acetylcholine receptors, γ-aminobutyric acid (GABA), glycine, and 5-hydroxytryptamine receptors. The second one is the 'Pore-loop' channels that include the...
Non-gated Ion Channels
Compared to the gated ion channels, the non-gated channels, also known as leakage or passive channels, have no gating mechanism.
Non-gated Ion Channels
Compared to the gated ion channels, the non-gated channels, also known as leakage or passive channels, have no gating mechanism.
Mechanically-gated Ion Channels

