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Effect of nephrotoxicants and hepatotoxicants on gene expression profile in human peripheral blood mononuclear cells
Shruta S Dadarkar1, Lyle C Fonseca, Arvind D Thakkar
1The Department of Pharmacology, Piramal Life Sciences Limited, Mumbai 400063, Maharashtra, India. shruta.dadarkar@piramal.com
Abstract:
Studying peripheral blood transcriptome in the quest for translational markers of toxicity is considered to be an attractive offshoot in the field of toxicogenomics. Moreover, it is acknowledged that, xenobiotics which cause a toxic response through similar mechanisms lead to distinctive gene expression patterns. The current study was undertaken to gauge the response of an accessible surrogate tissue, such as blood, to drug-induced perturbations aimed at deriving gene expression patterns. Human peripheral blood mononuclear cells (hPBMC) were exposed to conventional drugs, with reported kidney and/or liver injury, in order to determine their transcriptomic response. Test drugs were divided into two classes viz., drugs affecting kidney (cyclophosphamide, amphotericin B, gentamicin and cisplatin) and liver (acetaminophen, rosiglitazone, fluconazole and isoniazid). After performing gene expression analysis and hierarchical clustering, signature patterns for the two classes were obtained, with a set of 365 genes that can discriminate the two classes of drugs. Our results imply that transcriptional profile of hPBMC get altered as a consequence of drug exposure and unique patterns indicative of specific organ toxicity can hence be deduced. These signature patterns obtained for drugs could be studied for their qualification to identify drug-induced toxicity.
Insights
Peripheral blood cells can reveal unique gene expression patterns indicating specific organ toxicity from drugs. This toxicogenomics approach offers a new way to identify drug-induced toxicity.
Area of Science:
- Toxicogenomics
- Molecular Toxicology
- Biomarker Discovery
Background:
- Peripheral blood transcriptome analysis is a promising area in toxicogenomics for identifying translational toxicity markers.
- Xenobiotics causing toxicity via similar mechanisms often produce distinct gene expression patterns.
- Accessible surrogate tissues like blood are valuable for studying drug-induced perturbations.
Purpose of the Study:
- To assess the transcriptomic response of human peripheral blood mononuclear cells (hPBMC) to drug-induced toxicity.
- To derive gene expression patterns indicative of specific organ (kidney or liver) injury.
- To identify a gene signature for differentiating drug-induced kidney versus liver toxicity.
Main Methods:
- Exposure of hPBMC to conventional drugs known to cause kidney or liver injury.
- Classification of drugs into kidney-affecting and liver-affecting groups.
- Gene expression analysis and hierarchical clustering to identify distinct patterns.
Main Results:
- Drug exposure altered the transcriptional profile of hPBMC.
- A set of 365 genes was identified that can discriminate between kidney- and liver-targeting drugs.
- Unique gene expression patterns indicative of specific organ toxicity were deduced.
Conclusions:
- Transcriptional profiling of hPBMC can reflect drug-induced organ toxicity.
- The identified gene signature patterns hold potential for qualifying and identifying drug-induced toxicity.
- This approach may advance the development of predictive biomarkers for drug safety.
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