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Fermentation01:29

Fermentation

Most eukaryotic organisms require oxygen to survive and function adequately. Such organisms produce large amounts of energy during aerobic respiration by metabolizing glucose and oxygen into carbon dioxide and water. However, most eukaryotes can generate some energy in the absence of oxygen by anaerobic metabolism.
Fermentation is a type of metabolic process that occurs in the absence of oxygen, where organic molecules such as glucose are broken down to produce energy. During this process, the...
Production of Alcohol01:27

Production of Alcohol

Continuous fermentation is a key strategy in industrial ethanol production, particularly when efficiency, scalability, and high yields are essential. This approach allows for uninterrupted operation and optimized resource utilization. The primary feedstock, corn starch, undergoes enzymatic hydrolysis facilitated by α-amylase and glucoamylase. These enzymes break down the starch into fermentable sugars such as glucose, which are readily assimilated by fermentative microorganisms.Fermentation...
Bioreactor Controls-III01:22

Bioreactor Controls-III

Strain improvement is a foundational strategy in industrial microbiology aimed at maximizing microbial productivity, particularly because natural isolates typically yield commercially valuable products in very low concentrations. Although optimizing the culture medium and environmental conditions can improve yields, these adjustments are inherently limited by the organism’s genetic potential. As a result, the focus shifts toward genetic modifications to enhance biosynthetic capacity. The...
Microbial Fermentation01:23

Microbial Fermentation

Fermentation is a crucial anaerobic metabolic process that enables microbes to derive energy from sugar without relying on oxygen or an electron transport chain. This process is fundamental to various biological and industrial applications and is classified based on the metabolic products generated.Role of Pyruvate in FermentationPyruvate and its derivatives serve as key electron acceptors in fermentative pathways. The oxidation of NADH to regenerate NAD+ is essential for the continuation of...
Fates of Pyruvate01:20

Fates of Pyruvate

Pyruvate is the end product of glycolysis, where glucose is oxidized to pyruvate, simultaneously reducing NAD+ to NADH. Two molecules of ATP are also produced by substrate-level phosphorylation.
In aerobic organisms, pyruvate is metabolized via the citric acid cycle to produce reduced coenzymes NADH and FADH2. These coenzymes are then oxidized in the electron transport chain to produce ATP and, in the process, regenerate the NAD+ and FAD. As seen in some cell types and organisms, fermentation...
Microbes in Food Production01:29

Microbes in Food Production

Microbial fermentation is central to food biotechnology, enhancing flavor, texture, preservation, and stability. Fermentative microorganisms metabolize carbohydrates into organic acids, alcohols, and other metabolites that inhibit spoilage organisms and improve digestibility while contributing distinctive sensory qualities.In baking, amylases naturally present in flour hydrolyze starch into monosaccharides such as glucose, which Saccharomyces cerevisiae ferments anaerobically. Through...

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Related Experiment Video

Updated: Jun 8, 2026

Saccharomyces cerevisiae Exponential Growth Kinetics in Batch Culture to Analyze Respiratory and Fermentative Metabolism
07:38

Saccharomyces cerevisiae Exponential Growth Kinetics in Batch Culture to Analyze Respiratory and Fermentative Metabolism

Published on: September 30, 2018

Why does yeast ferment? A flux balance analysis study.

Evangelos Simeonidis1, Ettore Murabito, Kieran Smallbone

  • 1Manchester Centre for Integrative Systems Biology, Manchester Interdisciplinary Biocentre, 131 Princess Street, Manchester M1 7DN, UK. v.simeonidis@manchester.ac.uk

Biochemical Society Transactions
|September 25, 2010
PubMed
Summary

This study improves flux balance analysis (FBA) for yeast metabolic models by incorporating mitochondrial energy costs. This enhanced FBA better predicts aerobic fermentation and respiration patterns, aligning more closely with experimental observations.

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Last Updated: Jun 8, 2026

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Published on: October 24, 2016

Area of Science:

  • Systems Biology
  • Metabolic Engineering
  • Computational Biology

Background:

  • Genome-scale metabolic reconstructions for yeast are available but complex.
  • Constraint-based modeling, including flux balance analysis (FBA), offers a way to analyze these networks.
  • Standard FBA can produce unrealistic predictions, such as failing to predict aerobic fermentation in yeast.

Purpose of the Study:

  • To investigate the phenomenon of yeast fermentation versus respiration during aerobic growth.
  • To develop novel formulations of FBA to address limitations in predicting metabolic behavior.
  • To improve the accuracy of metabolic models in simulating yeast physiology.

Main Methods:

  • Applied constraint-based modeling and flux balance analysis (FBA).
  • Developed and tested novel FBA formulations.
  • Incorporated an energy cost associated with mitochondrial synthesis into the FBA model.

Main Results:

  • The modified FBA formulation showed improved predictions of yeast metabolic behavior.
  • The model demonstrated a closer approximation to experimental observations regarding aerobic fermentation.
  • The inclusion of mitochondrial synthesis costs helped resolve discrepancies in FBA predictions.

Conclusions:

  • Accounting for the energetic cost of mitochondria synthesis enhances FBA accuracy for yeast.
  • This refined FBA approach provides more realistic predictions of yeast fermentation and respiration.
  • The study offers a more accurate computational tool for understanding yeast metabolism.