Related Experiment Video
Updated: Jun 8, 2026

Generation and Assembly of Virus-Specific Nucleocapsids of the Respiratory Syncytial Virus
Published on: July 27, 2021
Direct interaction between two viral proteins, the nonstructural protein 2C and the capsid protein VP3, is required
Ying Liu1, Chunling Wang, Steffen Mueller
1Department of Molecular Genetics and Microbiology, School of Medicine, Stony Brook University, Stony Brook, New York, United States of America.
Abstract:
In spite of decades-long studies, the mechanism of morphogenesis of plus-stranded RNA viruses belonging to the genus Enterovirus of Picornaviridae, including poliovirus (PV), is not understood. Numerous attempts to identify an RNA encapsidation signal have failed. Genetic studies, however, have implicated a role of the non-structural protein 2C(ATPase) in the formation of poliovirus particles. Here we report a novel mechanism in which protein-protein interaction is sufficient to explain the specificity in PV encapsidation. Making use of a novel "reporter virus", we show that a quasi-infectious chimera consisting of the capsid precursor of C-cluster coxsackie virus 20 (C-CAV20) and the nonstructural proteins of the closely related PV translated and replicated its genome with wild type kinetics, whereas encapsidation was blocked. On blind passages, encapsidation of the chimera was rescued by a single mutation either in capsid protein VP3 of CAV20 or in 2C(ATPase) of PV. Whereas each of the single-mutation variants expressed severe proliferation phenotypes, engineering both mutations into the chimera yielded a virus encapsidating with wild type kinetics. Biochemical analyses provided strong evidence for a direct interaction between 2C(ATPase) and VP3 of PV and CAV20. Chimeras of other C-CAVs (CAV20/CAV21 or CAV18/CAV20) were blocked in encapsidation (no virus after blind passages) but could be rescued if the capsid and 2C(ATPase) coding regions originated from the same virus. Our novel mechanism explains the specificity of encapsidation without apparent involvement of an RNA signal by considering that (i) genome replication is known to be stringently linked to translation, (ii) morphogenesis is known to be stringently linked to genome replication, (iii) newly synthesized 2C(ATPase) is an essential component of the replication complex, and (iv) 2C(ATPase) has specific affinity to capsid protein(s). These conditions lead to morphogenesis at the site where newly synthesized genomes emerge from the replication complex.
Insights
Viral morphogenesis specificity is driven by protein interactions, not RNA signals. Poliovirus (PV) non-structural protein 2C(ATPase) directly binds capsid protein VP3, ensuring correct viral particle assembly.
Area of Science:
- Virology
- Molecular Biology
- Structural Biology
Background:
- The precise mechanism governing the morphogenesis of plus-stranded RNA viruses, specifically enteroviruses like poliovirus (PV), remains elusive despite extensive research.
- Previous attempts to pinpoint an RNA encapsidation signal have been unsuccessful, leaving the specificity of viral particle formation unexplained.
Purpose of the Study:
- To elucidate the mechanism of poliovirus (PV) encapsidation specificity.
- To investigate the role of protein-protein interactions in viral morphogenesis, particularly the involvement of non-structural protein 2C(ATPase).
Main Methods:
- Construction and analysis of a novel reporter virus system using chimeric viruses between PV and C-cluster coxsackie viruses (C-CAVs).
- Genetic manipulation involving single and double mutations in capsid protein VP3 and 2C(ATPase).
- Biochemical assays to confirm direct protein-protein interactions.
Main Results:
- A chimera of C-cluster coxsackie virus 20 (C-CAV20) and PV non-structural proteins showed blocked encapsidation, despite successful genome replication.
- Encapsidation was rescued by mutations in either C-CAV20's VP3 or PV's 2C(ATPase), with dual mutations restoring wild-type kinetics.
- Biochemical evidence confirmed direct interaction between 2C(ATPase) and VP3 from both PV and C-CAV20.
- Chimeras between different C-CAVs were blocked unless capsid and 2C(ATPase) originated from the same virus, highlighting specificity.
Conclusions:
- Viral morphogenesis specificity is mediated by direct protein-protein interactions, specifically between 2C(ATPase) and capsid proteins like VP3, rather than RNA signals.
- This interaction mechanism ensures that newly synthesized viral genomes are efficiently packaged at the replication site.
More Related Videos
Related Concept Videos
Viral Structure
Leaky Scanning
Retrovirus Life Cycles
Inhibitors of Virion Maturation and Assembly
Coronavirus
Intracellular Movement of Viruses and Bacteria

