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Updated: Jun 8, 2026

Quantitative PCR-based Assay to Measure Sonic Hedgehog Signaling in Cellular Model of Ciliogenesis
Published on: January 31, 2025
Differential expression of hedgehog signaling components and Snail/E-cadherin in human brain tumors
Chia-Hua Chou1, Ann-Shung Lieu, Chia-Hung Wu
1Department of Biochemistry, Faculty of Medicine, College of Medicine, Kaohsiung Medical University, Kaohsiung, Taiwan, ROC.
Abstract:
The hedgehog (Hh) transcription factor Gli induces transformation of epithelial cells via induction of Snail, a repressor of E-cadherin. Epithelial-mesenchymal transition is also a determinant of the progression of tumorigenesis, following down-regulation of E-cadherin. However, the role of Hh signaling components and Snail/E-cadherin in brain tumors is not yet fully understood. We analyzed the expression of Hh signaling components and Snail/E-cadherin in 69 brain tumors by reverse transcription-polymerase chain reaction (RT-PCR). The data showed that overexpression of Smo (35/69), Ptch (50/69), Gli1 (56/69), Gli2 (29/69) and N-myc (39/69) might contribute to brain tumorigenesis. Our results also indicated that Snail and E-cadherin showed opposing expression in malignant tumors (high grade astrocytoma and metastasis). Snail and E-cadherin showed less correlation in benign brain tumors. We further investigated mutations of Gli2 and Snail by RT-PCR and direct sequencing. No mutation was observed on Gli2 but several sporadic mutations on Snail were found, including S96G, S111L, S111L/S119Y and one nonsense mutation at codon 158 (Y158*). An in vitro E-cadherin promoter assay showed that S96G, S111L, S111L/S119Y Snail mutants were decreased by 15, 25 and 50%, respectively, whereas Y158* was increased by 40% compared to wild-type. Furthermore, our data showed that wild-type Snail and S96G, S111L, S111L/S119Y translocated to the nucleus, while the Y158* mutant failed to translocate to the nucleus. Taken together, our results demonstrate that Hh signaling components, the expression and mutations of Snail and the expression of E-cadherin may play an important role in human brain tumorigenesis.
Insights
The hedgehog signaling pathway and Snail/E-cadherin are implicated in brain tumor development. Mutations in Snail impact its function, suggesting a role in tumorigenesis.
Area of Science:
- Oncology
- Molecular Biology
- Neuroscience
Background:
- The hedgehog (Hh) signaling pathway regulates cell growth and differentiation.
- Epithelial-mesenchymal transition (EMT), driven by Snail and E-cadherin, is crucial in tumorigenesis.
- The roles of Hh signaling and Snail/E-cadherin in brain tumors are not fully understood.
Purpose of the Study:
- To investigate the expression of Hh signaling components, Snail, and E-cadherin in brain tumors.
- To identify mutations in Gli2 and Snail and their functional impact on E-cadherin regulation.
- To elucidate the contribution of these factors to human brain tumorigenesis.
Main Methods:
- Reverse transcription-polymerase chain reaction (RT-PCR) to analyze gene expression in 69 brain tumors.
- RT-PCR and direct sequencing to detect mutations in Gli2 and Snail.
- In vitro E-cadherin promoter assay to assess the functional effects of Snail mutants.
Main Results:
- Overexpression of Hh pathway components (Smo, Ptch, Gli1, Gli2) and N-myc was observed in brain tumors.
- Malignant brain tumors showed opposing expression of Snail and E-cadherin.
- Sporadic Snail mutations (S96G, S111L, S111L/S119Y, Y158*) were identified, affecting E-cadherin promoter activity and nuclear translocation.
Conclusions:
- Hedgehog signaling components, Snail expression/mutations, and E-cadherin expression are significant in human brain tumorigenesis.
- Snail mutations alter its function, potentially contributing to tumor progression.
- These findings highlight potential therapeutic targets in brain tumor treatment.
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