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Updated: Jun 8, 2026

Fluorescence-Based Detection of FEN1 Nuclease Activity and Screening of Small-Molecule Inhibitors
Published on: June 27, 2025
Functional regulation of FEN1 nuclease and its link to cancer
Li Zheng1, Jia Jia, L David Finger
1Institute of Cell Biology and Genetics, College of Life Sciences, Zhejiang University, Hangzhou, China.
Abstract:
Flap endonuclease-1 (FEN1) is a member of the Rad2 structure-specific nuclease family. FEN1 possesses FEN, 5'-exonuclease and gap-endonuclease activities. The multiple nuclease activities of FEN1 allow it to participate in numerous DNA metabolic pathways, including Okazaki fragment maturation, stalled replication fork rescue, telomere maintenance, long-patch base excision repair and apoptotic DNA fragmentation. Here, we summarize the distinct roles of the different nuclease activities of FEN1 in these pathways. Recent biochemical and genetic studies indicate that FEN1 interacts with more than 30 proteins and undergoes post-translational modifications. We discuss how FEN1 is regulated via these mechanisms. Moreover, FEN1 interacts with five distinct groups of DNA metabolic proteins, allowing the nuclease to be recruited to a specific DNA metabolic complex, such as the DNA replication machinery for RNA primer removal or the DNA degradosome for apoptotic DNA fragmentation. Some FEN1 interaction partners also stimulate FEN1 nuclease activities to further ensure efficient action in processing of different DNA structures. Post-translational modifications, on the other hand, may be critical to regulate protein-protein interactions and cellular localizations of FEN1. Lastly, we also review the biological significance of FEN1 as a tumor suppressor, with an emphasis on studies of human mutations and mouse models.
Insights
Flap endonuclease-1 (FEN1) is a versatile enzyme crucial for DNA repair and replication. Its multiple activities and interactions highlight its role in maintaining genome stability and its significance as a tumor suppressor.
Area of Science:
- Molecular Biology
- Biochemistry
- Genetics
Background:
- Flap endonuclease-1 (FEN1) is a key enzyme in the Rad2 nuclease family.
- FEN1 exhibits FEN, 5'-exonuclease, and gap-endonuclease activities.
- These activities enable FEN1's involvement in DNA replication, repair, and apoptosis.
Purpose of the Study:
- To summarize the diverse roles of FEN1's nuclease activities in DNA metabolic pathways.
- To discuss the regulation of FEN1 through protein interactions and post-translational modifications.
- To review FEN1's biological significance as a tumor suppressor.
Main Methods:
- Literature review of biochemical and genetic studies on FEN1.
- Analysis of FEN1's interactions with over 30 proteins.
- Examination of FEN1's post-translational modifications and their regulatory effects.
Main Results:
- FEN1 participates in Okazaki fragment maturation, stalled replication fork rescue, telomere maintenance, base excision repair, and apoptotic DNA fragmentation.
- FEN1 interacts with distinct protein groups, facilitating its recruitment to specific DNA metabolic complexes.
- Protein interactions and post-translational modifications regulate FEN1 activity, localization, and interactions.
Conclusions:
- FEN1's multiple nuclease activities are essential for various DNA metabolic processes.
- FEN1 regulation involves intricate protein-protein interactions and post-translational modifications.
- FEN1 functions as a tumor suppressor, with implications from human mutations and mouse models.
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