Related Experiment Video
Updated: Jun 8, 2026

Simultaneous DNA-RNA Extraction from Coastal Sediments and Quantification of 16S rRNA Genes and Transcripts by Real-time PCR
Published on: June 11, 2016
[Effect of environmental factors on bacterial community in Lake Dongping sediment]
Hongning Song1, Binghai Du, Mingyan Zhang
1College of Life Science, Shandong Agricultural University, Tai' an 271018, China. stick-874@163.com
Objective:
In order to investigate the effect of environmental factors on the bacterial composition of Lake Dongping sediment.
Methods:
We set six sampling points in Lake Dongping and sampled once in July and once October. Terminal Restriction Fragment Length Polymorphism (T-RFLP) method was used to analyze the bacterial diversity. Ammonium nitrogen (NH4(+)-N) , nitrate nitrogen (NO3(-)-N) , total nitrogen (TN), total phosphorus (TP), total organic carbon (TOC) and water depth were measured.
Results:
T-RFLP profiles showed high similarity among samples. However, bacterial diversity indices were significant difference in various samples. The richness, diversity, and evenness in samples which were collected in dry season (October) were generally higher than those in wet season (July), and the bacterial species dominance was higher in wet season than that in dry season. Principal Component Analysis showed that the structure of bacterial communities in sample 2B was marked different from the other samples. The results of Canonical Correspondence Analysis suggested that the abundance of 558 bp T-RF was negatively correlated with NH4(+)-N, NO3(-)-N, TN, TP and TOC, but positively correlated with TOC/TN and the water depth; the abundance of 64.5, 164, 509, and 543 bp T-RFs were positively correlated with NH4(+)-N, NO3(-)-N, TN, TOC, TOC/TN and the water depth. The dominant bacteria in Lake Dongping sediments were Firmicutes and Proteobacteria.
Conclusion:
Environmental factors affect bacterial diversity of Lake Dongping sediments, although affect less on indigenous bacteria.
More Related Videos
03:29Rodent-Proof Wall: An Efficient Physical Method for Controlling Rodents and its Efficiency Statistics
Published on: March 8, 2024
06:22The Floating Lab: Standard Operational Procedure for Collecting and Filtering Seawater Samples from Operating Ferries for Environmental DNA Analysis
Published on: August 1, 2025
Related Concept Videos
Freshwater Microbial Ecology
Marine Microbial Ecology
Microenvironments
Factors Influencing Microbial Growth: pH
Deep Sea Microbial Ecology
Microbial Wastewater Treatment