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Updated: Jun 8, 2026

A Guide to Production, Crystallization, and Structure Determination of Human IKK1/α
Published on: November 2, 2018
A cytoplasmic ATM-TRAF6-cIAP1 module links nuclear DNA damage signaling to ubiquitin-mediated NF-κB activation
Michael Hinz1, Michael Stilmann, Seda Çöl Arslan
1Max Delbrück Center for Molecular Medicine, Robert-Rössle-Strasse 10, 13125 Berlin, Germany.
Abstract:
As part of the genotoxic stress response, cells activate the transcription factor NF-κB. The DNA strand break sensor poly(ADP-ribose)-polymerase-1 (PARP-1) and the kinase ataxia telangiectasia mutated (ATM) act as proximal signal mediators. PARP-1 assembles a nucleoplasmic signalosome, which triggers PIASy-mediated IKKγ SUMOylation. ATM-dependent IKKγ phosphorylation and subsequent ubiquitination were implicated to activate the cytoplasmic IκB kinase (IKK) complex by unknown mechanisms. We show that activated ATM translocates in a calcium-dependent manner to cytosol and membrane fractions. Through a TRAF-binding motif, ATM activates TRAF6, resulting in Ubc13-mediated K63-linked polyubiquitin synthesis and cIAP1 recruitment. The ATM-TRAF6-cIAP1 module stimulates TAB2-dependent TAK1 phosphorylation. Both nuclear PARP-1- and cytoplasmic ATM-driven signaling branches converge at the IKK complex to catalyze monoubiquitination of IKKγ at K285. Our data indicate that exported SUMOylated IKKγ acts as a substrate. IKKγ monoubiquitination is a prerequisite for genotoxic IKK and NF-κB activation, but also promotes cytokine signaling.
Insights
Genotoxic stress activates nuclear poly(ADP-ribose)-polymerase-1 (PARP-1) and cytoplasmic ataxia telangiectasia mutated (ATM) signaling. These pathways converge to monoubiquitinate IKKγ, a crucial step for activating the IκB kinase (IKK) and NF-κB pathways.
Area of Science:
- Cellular Biology
- Molecular Biology
- Signaling Pathways
Background:
- The genotoxic stress response involves the activation of transcription factor NF-κB.
- Poly(ADP-ribose)-polymerase-1 (PARP-1) and ataxia telangiectasia mutated (ATM) are key mediators in DNA damage signaling.
- The precise mechanisms of IκB kinase (IKK) complex activation downstream of ATM remain unclear.
Purpose of the Study:
- To elucidate the molecular mechanisms by which ATM activates the IKK complex during genotoxic stress.
- To identify the convergence point of PARP-1 and ATM signaling pathways in NF-κB activation.
- To characterize the role of IKKγ modifications in genotoxic stress response.
Main Methods:
- Investigated the subcellular localization of ATM upon genotoxic stress.
- Utilized biochemical assays to study protein-protein interactions and modifications (SUMOylation, phosphorylation, ubiquitination).
- Employed molecular biology techniques to analyze signaling cascades involving TRAF6, cIAP1, TAK1, and IKK complex.
Main Results:
- Activated ATM translocates to the cytosol and membrane fractions in a calcium-dependent manner.
- ATM activates TRAF6, leading to K63-linked polyubiquitin synthesis and subsequent TAK1 phosphorylation via the ATM-TRAF6-cIAP1 module.
- Both nuclear PARP-1 and cytoplasmic ATM signaling converge on the IKK complex, catalyzing IKKγ monoubiquitination at K285, which is essential for IKK and NF-κB activation.
Conclusions:
- Genotoxic stress response involves coordinated nuclear and cytoplasmic signaling pathways.
- IKKγ monoubiquitination, downstream of PARP-1 and ATM, is a critical prerequisite for IKK and NF-κB activation.
- The elucidated pathway also plays a role in promoting cytokine signaling.
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