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Updated: Jun 8, 2026

A Fluorescence Microscopy Assay for Monitoring Mitophagy in the Yeast Saccharomyces cerevisiae
Published on: July 18, 2011
Microautophagy of the nucleus coincides with a vacuolar diffusion barrier at nuclear-vacuolar junctions
Rosie Dawaliby1, Andreas Mayer
1Département de Biochimie, Université de Lausanne, Chemin des Boveresses 155, 1066 Epalinges, Switzerland.
Abstract:
Nuclei bind yeast vacuoles via nucleus-vacuole (NV) junctions. Under nutrient restriction, NV junctions invaginate and release vesicles filled with nuclear material into vacuoles, resulting in piecemeal microautophagy of the nucleus (PMN). We show that the electrochemical gradient across the vacuolar membrane promotes invagination of NV junctions. Existing invaginations persist independently of the gradient, but final release of PMN vesicles requires again V-ATPase activity. We find that NV junctions form a diffusion barrier on the vacuolar membrane that excludes V-ATPase but is enriched in the VTC complex and accessible to other membrane-integral proteins. V-ATPase exclusion depends on the NV junction proteins Nvj1p,Vac8p, and the electrochemical gradient. It also depends on factors of lipid metabolism, such as the oxysterol binding protein Osh1p and the enoyl-CoA reductase Tsc13p, which are enriched in NV junctions, and on Lag1p and Fen1p. Our observations suggest that NV junctions form in two separable steps: Nvj1p and Vac8p suffice to establish contact between the two membranes. The electrochemical potential and lipid-modifying enzymes are needed to establish the vacuolar diffusion barrier, invaginate NV junctions, and form PMN vesicles.
Insights
The study reveals how yeast nuclei invaginate into vacuoles through nucleus-vacuole (NV) junctions, a process called piecemeal microautophagy of the nucleus (PMN). This process is driven by the vacuolar membrane
Area of Science:
- Cell Biology
- Molecular Biology
- Autophagy Research
Background:
- Nuclei and vacuoles interact in yeast via nucleus-vacuole (NV) junctions.
- Nutrient restriction triggers piecemeal microautophagy of the nucleus (PMN), where nuclear material is released into vacuoles.
Purpose of the Study:
- To elucidate the mechanisms and molecular players involved in the invagination and vesicle release at NV junctions during PMN.
- To investigate the role of the electrochemical gradient and lipid metabolism in regulating NV junction dynamics.
Main Methods:
- Utilized yeast genetics and live-cell imaging to study NV junction formation and function.
- Investigated the impact of electrochemical gradients and specific proteins (Nvj1p, Vac8p, Osh1p, Tsc13p) on NV junction dynamics.
- Analyzed the role of V-ATPase and VTC complex in PMN vesicle formation.
Main Results:
- The electrochemical gradient across the vacuolar membrane drives NV junction invagination.
- NV junctions form a diffusion barrier excluding V-ATPase but including the VTC complex.
- Lipid-modifying enzymes and specific proteins are crucial for establishing the diffusion barrier and PMN vesicle formation.
Conclusions:
- NV junction formation involves two steps: initial contact via Nvj1p/Vac8p and subsequent invagination/vesicle formation driven by electrochemical potential and lipid metabolism.
- The study identifies key regulators of PMN, offering insights into nuclear-vacuolar transport and autophagy.
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