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Updated: Jun 7, 2026

MicroRNA In situ Hybridization for Formalin Fixed Kidney Tissues
Published on: November 30, 2013
The VHL-dependent regulation of microRNAs in renal cancer
Calida S Neal1, Michael Z Michael, Lesley H Rawlings
1Renal Unit, School of Medicine, Flinders University, Flinders Medical Centre, Adelaide, Australia.
Background:
The commonest histological type of renal cancer, clear cell renal cell carcinoma (cc RCC), is associated with genetic and epigenetic changes in the von Hippel-Lindau (VHL) tumour suppressor. VHL inactivation leads to induction of hypoxia-inducible factors (HIFs) and a hypoxic pattern of gene expression. Differential levels of specific microRNAs (miRNAs) are observed in several tumours when compared to normal tissue. Given the central role of VHL in renal cancer formation, we examined the VHL-dependent regulation of miRNAs in renal cancer.
Methods:
VHL-dependent miRNA expression in cc RCC was determined by microarray analysis of renal cell line RCC4 with mutated VHL (RCC4-VHL) and reintroduced wild-type VHL (RCC4 + VHL). Five miRNAs highly upregulated in RCC4 + VHL and five miRNAs highly downregulated in RCC4 + VHL were studied further, in addition to miR-210, which is regulated by the HIF-VHL system. miRNA expression was also measured in 31 cc RCC tumours compared to adjacent normal tissue.
Results:
A significant increase in miR-210, miR-155 and miR-21 expression was observed in the tumour tissue. miR-210 levels also showed a correlation with a HIF-regulated mRNA, carbonic anhydrase IX (CAIX), and with VHL mutation or promoter methylation. An inverse correlation was observed between miR-210 expression and patient survival, and a putative target of miR-210, iron-sulfur cluster assembly protein (ISCU1/2), shows reciprocal levels of mRNA expression in the tumours.
Conclusions:
We have identified VHL-regulated miRNAs and found that for some the regulation is HIF-dependent and for others it is HIF-independent. This pattern of regulation was also seen in renal cancer tissue for several of these miRNAs (miR-210, miR-155, let-7i and members of the miR-17-92 cluster) when compared with normal tissue. miR-210 showed marked increases in expression in renal cancer and levels correlated with patient survival. The inverse correlation between miR-210 levels and ISCU1/2 provides support for the hypothesis that ISCU1/2 is a target of miR-210 and that it may contribute to the anaerobic respiration seen in renal (and other) tumours.See Commentary: http://www.biomedcentral.com/1741-7015/8/65.
Insights
Von Hippel-Lindau (VHL) tumor suppressor gene inactivation in clear cell renal cell carcinoma (cc RCC) affects microRNA (miRNA) expression. Increased miR-210 levels correlate with poor patient survival, suggesting a role in tumor progression.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Clear cell renal cell carcinoma (cc RCC) is the most common kidney cancer.
- VHL gene mutations lead to hypoxia-inducible factors (HIFs) and altered gene expression.
- MicroRNAs (miRNAs) show differential expression in tumors.
Purpose of the Study:
- To investigate VHL-dependent regulation of miRNAs in cc RCC.
- To identify specific miRNAs involved in cc RCC pathogenesis.
Main Methods:
- Microarray analysis of cc RCC cell lines with and without VHL.
- Quantitative PCR for selected miRNAs (miR-210, miR-155, miR-21).
- Correlation analysis with HIF-regulated genes and patient survival in 31 cc RCC tumors.
Main Results:
- VHL-regulated miRNAs were identified.
- miR-210, miR-155, and miR-21 were significantly upregulated in cc RCC tumors.
- Increased miR-210 expression correlated with HIF activity, VHL status, and reduced patient survival.
Conclusions:
- VHL influences miRNA expression through both HIF-dependent and independent pathways.
- miR-210 is upregulated in cc RCC and linked to poorer survival.
- miR-210 may target ISCU1/2, contributing to anaerobic respiration in tumors.
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