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Selecting Multiple Biomarker Subsets with Similarly Effective Binary Classification Performances
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Bayesian variable selection for latent class models.

Joyee Ghosh1, Amy H Herring, Anna Maria Siega-Riz

  • 1Department of Statistics and Actuarial Science, The University of Iowa, Iowa City, Iowa 52242, USA. joyee-ghosh@uiowa.edu

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Summary
This summary is machine-generated.

This study introduces a Bayesian approach for identifying key predictors in latent class models, addressing variable selection uncertainty. The method was applied to understand factors influencing weight gain patterns during pregnancy.

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Area of Science:

  • Statistics
  • Biostatistics
  • Machine Learning

Background:

  • Latent class models are useful for identifying unobserved subgroups in data.
  • Predicting these latent classes based on subject characteristics is crucial for understanding underlying phenomena.
  • Variable selection uncertainty can complicate the identification of important predictors.

Purpose of the Study:

  • To develop a latent class model where class probabilities are influenced by subject-specific covariates.
  • To identify significant predictors of these latent classes, accounting for variable selection uncertainty.
  • To apply the proposed methodology to real-world data, specifically pregnancy weight gain.

Main Methods:

  • Developed a latent class model incorporating subject-specific covariates.
  • Proposed a Bayesian variable selection approach to handle uncertainty in predictor identification.
  • Implemented a stochastic search Gibbs sampler for posterior computation.
  • Calculated model-averaged estimates, including marginal inclusion probabilities for predictors.

Main Results:

  • The Bayesian variable selection approach effectively identified important predictors of latent classes.
  • The methodology demonstrated robustness in simulation studies.
  • Application to pregnancy weight gain data revealed key predictors associated with different weight gain patterns.

Conclusions:

  • The proposed Bayesian latent class modeling framework with variable selection is effective for identifying key predictors.
  • This approach provides reliable model-averaged estimates, enhancing interpretability.
  • The findings offer insights into factors influencing pregnancy weight gain, with potential implications for clinical practice.