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Updated: Jun 6, 2026

Investigation of the Transcriptional Role of a RUNX1 Intronic Silencer by CRISPR/Cas9 Ribonucleoprotein in Acute Myeloid Leukemia Cells
Published on: September 1, 2019
Phosphorylation of RUNX1 by cyclin-dependent kinase reduces direct interaction with HDAC1 and HDAC3
1Division of Pediatric Oncology, The Johns Hopkins University School of Medicine, Baltimore, Maryland 21231, USA.
Insights
RUNX1 phosphorylation by cyclin-dependent kinases (cdks) reduces its interaction with HDAC1/3, enhancing hematopoietic stem cell proliferation. This suggests a mechanism for RUNX1 in leukemic transformation and potential therapeutic targeting.
Area of Science:
- Hematology
- Molecular Biology
- Cancer Research
Background:
- RUNX1 is crucial for hematopoietic stem cell development and lineage maturation.
- RUNX1 mutations are implicated in leukemic transformation.
- Cyclin-dependent kinases (cdks) phosphorylate RUNX1, enhancing its trans-activation activity.
Purpose of the Study:
- To investigate the interaction between RUNX1 and histone deacetylases (HDACs).
- To determine the role of RUNX1 phosphorylation sites (Ser-48, Ser-303, Ser-424) in HDAC binding.
- To elucidate the functional consequences of altered RUNX1-HDAC interaction on hematopoietic progenitor cell proliferation.
Main Methods:
- Co-immunoprecipitation assays to assess RUNX1-HDAC1/3 interactions in cells and in vitro.
- Site-directed mutagenesis of RUNX1 phosphorylation sites (Ser to Asp or Ala).
- In vitro phosphorylation of RUNX1 using cdk1/cyclinB.
- Assessment of hematopoietic progenitor cell proliferation following transduction with modified RUNX1.
Main Results:
- Endogenous RUNX1 interacts with HDAC1 and HDAC3.
- Mutation of RUNX1 serines to aspartic acid reduced HDAC interaction, while mutation to alanine increased it.
- RUNX1 phosphorylation by cdks, mimicking dephosphorylation at these sites, reduced HDAC binding.
- RUNX1 variants that reduced HDAC interaction stimulated marrow progenitor cell proliferation more potently.
Conclusions:
- RUNX1 phosphorylation by cdks decreases its interaction with HDAC1/3.
- Reduced RUNX1-HDAC interaction enhances RUNX1 trans-activation and stimulates hematopoietic progenitor cell proliferation.
- This mechanism provides insight into RUNX1's role in hematopoiesis and leukemogenesis.
Abstract:
RUNX1 regulates formation of the definitive hematopoietic stem cell and its subsequent lineage maturation, and mutations of RUNX1 contribute to leukemic transformation. Phosphorylation of Ser-48, Ser-303, and Ser-424 by cyclin-dependent kinases (cdks) increases RUNX1 trans-activation activity without perturbing p300 interaction. We now find that endogenous RUNX1 interacts with endogenous HDAC1 or HDAC3. Mutation of the three RUNX1 serines to aspartic acid reduces co-immunoprecipitation with HDAC1 or HDAC3 when expressed in 293T cells; mutation of these three serines to alanine increases HDAC interaction, and mutation of each serine individually to aspartic acid also reduces these interactions. GST-RUNX1 isolated from bacterial extracts bound in vitro translated HDAC1 or HDAC3, and these interactions were weakened by mutation of Ser-48, Ser-303, and Ser-424 to aspartic acid. The ability of RUNX1 phosphorylation and not only serine to aspartic acid conversion to reduce HDAC1 binding was demonstrated using wild-type GST-RUNX1 phosphorylated in vitro using cdk1/cyclinB and by exposure of 293T cells transduced with RUNX1 and HDAC1 to roscovitine, a cdk inhibitor. Finally, RUNX1 or RUNX1(tripleD), in which Ser-48, Ser-303, and Ser-424 are mutated to aspartic acid, stimulated proliferation of transduced, lineage-negative murine marrow progenitors more potently than did RUNX1(tripleA), in which these serines are mutated to alanine, suggesting that stimulation of RUNX1 trans-activation by cdk-mediated reduction in HDAC interaction increases marrow progenitor cell proliferation.
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