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Updated: Jun 6, 2026

Directed Protein Packaging within Outer Membrane Vesicles from Escherichia coli: Design, Production and Purification
Published on: November 16, 2016
The host outer membrane proteins OmpA and OmpC are associated with the Shigella phage Sf6 virion
Haiyan Zhao1, Reuben D Sequeira, Nadezhda A Galeva
1Department of Molecular Biosciences, University of Kansas, 1200 Sunnyside Avenue, Lawrence, KS 66045, USA. zhaohy@ku.edu
Abstract:
Assembly of dsDNA bacteriophage is a precisely programmed process. Potential roles of host cell components in phage assembly haven't been well understood. It was previously reported that two unidentified proteins were present in bacteriophage Sf6 virion (Casjens et al, 2004, J.Mol.Biol. 339, 379-394, Fig. 2A). Using tandem mass spectrometry, we have identified the two proteins as outer membrane proteins (OMPs) OmpA and OmpC from its host Shigella flexneri. The transmission electron cryo-microscopy structure of Sf6 shows significant density at specific sites at the phage capsid inner surface. This density fit well with the characteristic beta-barrel domains of OMPs, thus may be due to the two host proteins. Locations of this density suggest a role in Sf6 morphogenesis reminiscent of phage-encoded cementing proteins. These data indicate a new, OMP-related phage:host linkage, adding to previous knowledge that some lambdoid bacteriophage genomes contain OmpC-like genes that express phage-encoded porins in the lysogenic state.
Insights
Bacteriophage Sf6 assembly utilizes host Shigella flexneri outer membrane proteins (OMPs) OmpA and OmpC. These OMPs may play a role in phage morphogenesis, revealing a novel phage:host linkage.
Area of Science:
- Microbiology
- Structural Biology
- Virology
Background:
- The role of host cell components in bacteriophage assembly is not fully understood.
- Previous studies indicated unidentified proteins within the bacteriophage Sf6 virion.
Purpose of the Study:
- To identify the unknown proteins found in bacteriophage Sf6 virions.
- To investigate the potential role of host cell components in bacteriophage assembly.
Main Methods:
- Tandem mass spectrometry was employed to identify proteins within the Sf6 virion.
- Transmission electron cryo-microscopy was used to determine the structure of Sf6.
Main Results:
- Two host outer membrane proteins (OMPs), OmpA and OmpC from Shigella flexneri, were identified in the Sf6 virion.
- Cryo-EM structural analysis revealed densities on the inner surface of the Sf6 capsid, consistent with OMP beta-barrel domains.
- The location of these densities suggests a role in Sf6 morphogenesis, similar to phage-encoded cementing proteins.
Conclusions:
- Host OMPs (OmpA and OmpC) are incorporated into the bacteriophage Sf6 virion.
- This finding establishes a new phage:host linkage involving OMPs and suggests their involvement in phage assembly.
- This adds to existing knowledge of phage-encoded porins in some bacteriophages.
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