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Published on: March 17, 2023
Pathogenic mutations in antisense mitochondrial tRNAs
1Department of Evolution, Ecology & Behaviour, The Hebrew University of Jerusalem, Israel. hselig1@yahoo.com
Abstract:
Pathogenic mutations in mitochondrial tRNAs are 6.5 times more frequent than in other mitochondrial genes. This suggests that tRNA mutations perturb more than one function. A potential additional tRNA gene function is that of templating for antisense tRNAs. Pathogenic mutations weaken cloverleaf secondary structures of sense tRNAs. Analyses here show similar effects for most antisense tRNAs, especially after adjusting for associations between sense and antisense cloverleaf stabilities. These results imply translational activity by antisense tRNAs. For sense tRNAs Ala and Ser UCN, pathogenicity associates as much with sense as with antisense cloverleaf formation. For tRNA Pro, pathogenicity seems associated only with antisense, not sense tRNA cloverleaf formation. Translational activity by antisense tRNAs is expected for the 11 antisense tRNAs processed by regular sense RNA maturation, those recognized by their cognate amino acid's tRNA synthetase, and those forming relatively stable cloverleaves as compared to their sense counterpart. Most antisense tRNAs probably function routinely in translation and extend the tRNA pool (extension hypothesis); others do not (avoidance hypothesis). The greater the expected translational activity of an antisense tRNA, the more pathogenic mutations weaken its cloverleaf secondary structure. Some evidence for RNA interference, a more classical role for antisense tRNAs, exists only for tRNA Ser UCN. Mutation pathogenicity probably frequently results from a mixture of effects due to sense and antisense tRNA translational activity for many mitochondrial tRNAs. Genomic studies should routinely explore for translational activity by antisense tRNAs.
Insights
Pathogenic mitochondrial tRNA mutations disrupt gene function, potentially by affecting both sense and antisense tRNA roles. This suggests antisense tRNAs may actively participate in translation, impacting mutation pathogenicity.
Area of Science:
- Mitochondrial genetics
- RNA biology
- Molecular genetics
Background:
- Pathogenic mutations are significantly more frequent in mitochondrial transfer RNA (tRNA) genes compared to other mitochondrial genes.
- This higher frequency suggests mitochondrial tRNA mutations may affect multiple cellular functions beyond canonical protein synthesis.
Purpose of the Study:
- To investigate the potential dual function of mitochondrial tRNAs, including their role in templating antisense tRNAs.
- To determine if pathogenic mutations impact the secondary structure of both sense and antisense tRNAs, implying translational activity of antisense tRNAs.
Main Methods:
- Analysis of cloverleaf secondary structures of both sense and antisense mitochondrial tRNAs.
- Comparative analysis of mutation effects on sense and antisense tRNA structures, accounting for stability correlations.
- Evaluation of conditions supporting translational activity of antisense tRNAs.
Main Results:
- Pathogenic mutations weaken the cloverleaf secondary structures of sense tRNAs, and similarly affect most antisense tRNAs.
- Evidence suggests translational activity for many antisense tRNAs, particularly those processed by standard RNA maturation and recognized by aminoacyl-tRNA synthetases.
- The degree of predicted translational activity of antisense tRNAs correlates with the impact of pathogenic mutations on their structure.
Conclusions:
- Mitochondrial tRNA mutations can affect both sense and antisense tRNA functions, contributing to pathogenicity.
- Antisense tRNAs likely play a routine role in mitochondrial translation, supporting the 'extension hypothesis'.
- Future genomic studies should routinely assess the translational activity of antisense tRNAs.
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