Related Experiment Video
Updated: Jun 6, 2026

TMT Sample Preparation for Proteomics Facility Submission and Subsequent Data Analysis
Published on: June 8, 2020
Preparing molecular interaction data for publication
Sandra Orchard1, Henning Hermjakob
1EMBL Outstation, European Bioinformatics Institute (EBI), Cambridge, UK.
Abstract:
It is now becoming more usual for journals to request the submission of the data accompanying an article to an appropriate public repository. Such users may access the data in a format appropriate for display and reanalysis. It is commonly accepted that molecular interaction databases will hold all the large-scale interaction datasets and enrich this with lower throughput data. Previously this small-scale interaction data has been archively curated from the literature but, increasingly, deposition of such information is also being seen as an integral part of the publication process. This chapter acts as a brief guide to preparing both large- and small-scale data for publication and gives a range of different submission options.
More Related Videos
10:29Quantitative Structure-Activity Relationship, Activity Prediction, and Molecular Dynamics of Non-nucleotide Reverse Transcriptase Inhibitors
Published on: May 9, 2025
05:08Application of I TASSER, trRosetta, UCSF Chimera, HADDOCK server, and HEX loria for De Novo and In Silico Design of Proteins
Published on: July 8, 2025
Related Concept Videos
The Equilibrium Binding Constant and Binding Strength
Protein-protein Interfaces
Ligand Binding Sites
Protein-ligand interactions are quite specific; even though numerous potential ligands surround a cellular protein at any given time, only a particular ligand can bind to that protein. Moreover, a ligand binds only to a dedicated area on the surface of the protein, known as the...
Protein Networks
These interactions can be represented through maps depicting protein-protein interaction networks, represented as nodes and edges. Nodes are circles that are representative of a protein,...
Van der Waals Interactions