Related Experiment Video
Updated: Jun 6, 2026

Biotin-based Pulldown Assay to Validate mRNA Targets of Cellular miRNAs
Published on: June 12, 2018
[DNA polymerase delta-interacting protein 38 is a target gene of microRNA-291a-5p]
1College of Life Science, South China Normal University, Guangzhou 510631, China. lindq168@scnu.edu.cn
Abstract:
DNA polymerase delta-interacting protein 38 (PDIP38) was identified in 2003 as a human DNA polymerase delta interacting protein which plays important roles in DNA repair, mitosis and vascular smooth muscle cells (VSMCs) migration. Our previous study showed that PDIP38 was expressed in mouse embryonic stem (ES) cells and upregulated in protein levels after differentiation from ES cells, while the expression in mRNA levels was not changed. We supposed that microRNA played key roles in the regulation of PDIP38 and the differentiation of ES cells. By bioinformatics assay, we predicted that PDIP38 was a potential target of microRNA--291a-5p (miR-291a-5p). Furthermore, we validated the possibility of miR-291a-5p to regulate the protein expression of PDIP38. Using luciferase reporter assay, realtime PCR and western blot methods, we firstly demonstrated that miR-291a-5p directly inhibited the expression of PDIP38. The present results shed a new light on the study of PDIP38 and miR-291a-5p in the differentiation of ES cells.
Insights
MicroRNA-291a-5p directly inhibits DNA polymerase delta-interacting protein 38 (PDIP38) expression. This finding reveals a novel regulatory mechanism for PDIP38 during embryonic stem cell differentiation.
Area of Science:
- Molecular biology
- Stem cell research
- Gene regulation
Context:
- DNA polymerase delta-interacting protein 38 (PDIP38) is crucial for DNA repair and cell migration.
- Previous studies indicated PDIP38 protein upregulation during mouse embryonic stem cell (ES cell) differentiation without mRNA level changes.
- This suggests post-transcriptional regulation, potentially involving microRNAs.
Purpose:
- To investigate the role of microRNAs in regulating PDIP38 expression during ES cell differentiation.
- To identify specific microRNAs targeting PDIP38.
- To validate the regulatory relationship between a predicted microRNA and PDIP38.
Summary:
- Bioinformatic analysis predicted microRNA-291a-5p (miR-291a-5p) as a potential regulator of PDIP38.
- Luciferase reporter assays, real-time PCR, and Western blot experiments confirmed that miR-291a-5p directly inhibits PDIP38 protein expression.
- This study demonstrates a direct inhibitory effect of miR-291a-5p on PDIP38.
Impact:
- Provides novel insights into the post-transcriptional regulation of PDIP38.
- Elucidates a new mechanism controlling PDIP38 levels during embryonic stem cell differentiation.
- Establishes miR-291a-5p as a direct inhibitor of PDIP38, opening avenues for further research in stem cell biology and related fields.
More Related Videos
08:40Genome-wide Screen for miRNA Targets Using the MISSION Target ID Library
Published on: April 6, 2012
11:06Genome-wide Analysis of HDAC Inhibitor-mediated Modulation of microRNAs and mRNAs in B Cells Induced to Undergo Class-switch DNA Recombination and Plasma Cell Differentiation
Published on: September 20, 2017
Related Concept Videos
MicroRNAs
MicroRNAs
MicroRNAs
piRNA - Piwi-interacting RNAs
RNA Interference
This process occurs naturally in cells, often through the activity of genomically-encoded microRNAs. Researchers can take advantage of this mechanism by introducing synthetic RNAs to deactivate specific genes for research or therapeutic purposes. For example, RNAi could be used...
Experimental RNAi