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Updated: Jun 6, 2026

Genome-Wide Analysis of DNA Methylation in Gastrointestinal Cancer
Published on: September 18, 2020
IGFBP7 is a p53 target gene inactivated in human lung cancer by DNA hypermethylation
Yuan Chen1, Tiantian Cui, Thomas Knösel
1Institute of Pathology, University Hospital Jena, Ziegelmühlenweg 1, 07743 Jena, Germany.
Abstract:
Insulin-like growth factor binding protein 7 (IGFBP7) was considered a tumor suppressor gene in lung cancer. However, the mechanism responsible for the downregulation of this gene has not yet been fully understood. In this study, we analyzed the epigenetic inactivation of IGFBP7 expression in human lung cancer. We found that 14 out of 16 lung cancer cell lines showed decreased expression of IGFBP7 compared to control cells by real-time RT-PCR, and 42 out of 90 patients (46.7%) with primary lung tumor exhibited negative staining of IGFBP7 by immunohistochemistry analysis. The IGFBP7 expression could be restored by demethylation agent 5-aza-2'-deoxycytidine (DAC) in 7 cancer cell lines. Methylation status of IGFBP7 was further evaluated by bisulfite sequencing (BS) and methylation-specific-PCR (MSP). It turned out that low expression of IGFBP7 was associated with DNA methylation in lung cancer cell lines and in primary lung tumors (P=0.019). To explore the regulatory role of p53 on IGFBP7, we transfected a wild type p53 expression vector into lung cancer cell lines H1299, H2228, and H82. Forced expression of p53 increased IGFBP7 expression only in H82 harboring no IGFBP7 methylation, while transfection in combination with DAC induced the expression of IGFBP7 in H1299 and H2228, in which IGFBP7 was methylated. Additionally, treatment with p53 inducer adriamycin (ADR) alone or in combination with DAC increased the expression of IGFBP7 in the 3 cell lines. Our data suggest that IGFBP7 is inactivated in lung cancer by DNA hypermethylation in both lung cancer cell lines and primary lung tumors, and IGFBP7 might be regulated by p53 in lung cancer cells.
Insights
Insulin-like growth factor binding protein 7 (IGFBP7) is epigenetically silenced by DNA hypermethylation in lung cancer. This downregulation is linked to p53, suggesting IGFBP7 as a potential therapeutic target.
Area of Science:
- Oncology
- Molecular Biology
- Epigenetics
Background:
- Insulin-like growth factor binding protein 7 (IGFBP7) is recognized as a tumor suppressor in lung cancer.
- The precise mechanisms behind IGFBP7 downregulation in lung cancer remain incompletely understood.
Purpose of the Study:
- To investigate the epigenetic inactivation of IGFBP7 expression in human lung cancer.
- To explore the regulatory role of p53 in IGFBP7 expression within lung cancer cells.
Main Methods:
- Real-time RT-PCR and immunohistochemistry to assess IGFBP7 expression.
- Demethylation agent (DAC), bisulfite sequencing (BS), and methylation-specific-PCR (MSP) to evaluate DNA methylation.
- Transfection with wild-type p53 and treatment with p53 inducer (adriamycin) to study p53's regulatory role.
Main Results:
- Decreased IGFBP7 expression was observed in 14/16 lung cancer cell lines and 46.7% of primary lung tumors.
- IGFBP7 expression restoration by DAC in 7 cell lines, with low expression correlating with DNA methylation (P=0.019).
- p53 expression increased IGFBP7 in unmethylated cells; combined p53 and DAC induced expression in methylated cells. Adriamycin also upregulated IGFBP7.
Conclusions:
- IGFBP7 is epigenetically inactivated in lung cancer via DNA hypermethylation in both cell lines and primary tumors.
- p53 appears to regulate IGFBP7 expression in lung cancer cells, suggesting a potential therapeutic avenue.
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