Mre11 nuclease activity and Ctp1 regulate Chk1 activation by Rad3ATR and Tel1ATM checkpoint kinases at double-strand breaks
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Published on: June 26, 2020
Oliver Limbo1, Mary E Porter-Goff, Nicholas Rhind
1Department of Molecular Biology, The Scripps Research Institute, 10550 North Torrey Pines Rd., La Jolla, CA 92037, USA.
Abstract:
Rad3, the Schizosaccharomyces pombe ortholog of human ATR and Saccharomyces cerevisiae Mec1, activates the checkpoint kinase Chk1 in response to DNA double-strand breaks (DSBs). Rad3(ATR/Mec1) associates with replication protein A (RPA), which binds single-stranded DNA overhangs formed by DSB resection. In humans and both yeasts, DSBs are initially detected and processed by the Mre11-Rad50-Nbs1(Xrs2) (MRN) nucleolytic protein complex in association with the Tel1(ATM) checkpoint kinase and the Ctp1(CtIP/Sae2) DNA-end processing factor; however, in budding yeast, neither Mre11 nuclease activity or Sae2 are required for Mec1 signaling at irreparable DSBs. Here, we investigate the relationship between DNA end processing and the DSB checkpoint response in fission yeast, and we report that Mre11 nuclease activity and Ctp1 are critical for efficient Rad3-to-Chk1 signaling. Moreover, deleting Ctp1 reveals a Tel1-to-Chk1 signaling pathway that bypasses Rad3. This pathway requires Mre11 nuclease activity, the Rad9-Hus1-Rad1 (9-1-1) checkpoint clamp complex, and Crb2 checkpoint mediator. Ctp1 negatively regulates this pathway by controlling MRN residency at DSBs. A Tel1-to-Chk1 checkpoint pathway acting at unresected DSBs provides a mechanism for coupling Chk1 activation to the initial detection of DSBs and suggests that ATM may activate Chk1 by both direct and indirect mechanisms in mammalian cells.
Insights
DNA end processing is critical for the Rad3-Chk1 DNA double-strand break (DSB) response in fission yeast. Deleting Ctp1 reveals an alternative Tel1-Chk1 pathway, suggesting conserved mechanisms for DSB signaling.
Area of Science:
- Molecular Biology
- Cellular Biology
- Genetics
Background:
- DNA double-strand breaks (DSBs) trigger checkpoint responses to maintain genomic integrity.
- Rad3 (ATR/Mec1) and Tel1 (ATM) are key kinases in DSB signaling pathways.
- DNA end processing factors, including Mre11 and Ctp1, are involved in DSB detection and signaling.
Purpose of the Study:
- To investigate the role of DNA end processing in the Rad3-Chk1 DSB checkpoint pathway in fission yeast.
- To identify alternative DSB signaling pathways that bypass Rad3.
- To elucidate the regulatory mechanisms coupling DSB detection to checkpoint activation.
Main Methods:
- Genetic analysis of fission yeast mutants (e.g., deletion of Ctp1).
- Analysis of checkpoint kinase activation (Rad3 and Tel1) and downstream signaling (Chk1).
- Investigation of protein complex roles (MRN, 9-1-1 clamp, Crb2) in DSB response.
Main Results:
- Mre11 nuclease activity and Ctp1 are essential for efficient Rad3-Chk1 signaling at DSBs.
- Deletion of Ctp1 activates a Tel1-Chk1 pathway that bypasses Rad3.
- This alternative pathway requires Mre11 nuclease activity, the 9-1-1 clamp, and Crb2.
- Ctp1 negatively regulates the Tel1-Chk1 pathway by controlling MRN complex localization.
Conclusions:
- Fission yeast DNA end processing is crucial for robust Rad3-Chk1 activation.
- A Tel1-Chk1 pathway operates at unresected DSBs, providing a mechanism for rapid Chk1 activation.
- These findings suggest conserved roles for ATM/Tel1 in directly and indirectly activating Chk1 in mammalian cells.
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