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Biosensor for Detection of Antibiotic Resistant Staphylococcus Bacteria
Published on: May 8, 2013
Distinct bacteriophages encoding Panton-Valentine leukocidin (PVL) among international methicillin-resistant
E Boakes1, A M Kearns, M Ganner
1Staphylococcus Reference Unit, Laboratory of Healthcare Associated Infections, Centre for Infections, Health Protection Agency, 61 Colindale Avenue, London NW9 5EQ, United Kingdom. eve.boakes@hpa.org.uk
Abstract:
Genetically diverse community-associated methicillin resistant Staphylococcus aureus (CA-MRSA) can harbor a bacteriophage encoding Panton-Valentine leukocidin (PVL) lysogenized into its chromosome (prophage). Six PVL phages (ΦPVL, Φ108PVL, ΦSLT, ΦSa2MW, ΦSa2USA, and ΦSa2958) are known, and single-nucleotide polymorphisms (SNPs) in the PVL genes have been reported. We sought to determine the distribution of lysogenized PVL phages among MRSA strains with PVL (PVL-MRSA strains), the PVL gene sequences, and the chromosomal phage insertion sites in 114 isolates comprising nine clones of PVL-MRSA that were selected for maximal underlying genetic diversity. The six PVL phages were identified by PCR; ΦSa2USA was present in the highest number of different lineages (multilocus sequence type clonal complex 1 [CC1], CC5, CC8, and sequence type 93 [ST93]) (n = 37 isolates). Analysis of 92 isolates confirmed that PVL phages inserted into the same chromosomal insertion locus in CC22, -30, and -80 but in a different locus in isolates of CC1, -5, -8, -59, and -88 and ST93 (and CC22 in two isolates). Within the two different loci, specific attachment motifs were found in all cases, although some limited inter- and intralineage sequence variation occurred. Overall, lineage-specific relationships between the PVL phage, the genes that encode the toxin, and the position at which the phage inserts into the host chromosome were identified. These analyses provide important insights into the microepidemiology of PVL-MRSA, will prove a valuable adjunct in outbreak investigation, and may help predict the emergence of new strains.
Insights
Community-associated methicillin-resistant Staphylococcus aureus (CA-MRSA) strains carry Panton-Valentine leukocidin (PVL) bacteriophages. This study maps PVL phage distribution, gene sequences, and chromosomal insertion sites in diverse MRSA strains, revealing lineage-specific patterns crucial for understanding microepidemiology and predicting emergence.
Area of Science:
- Microbiology
- Genetics
- Epidemiology
Background:
- Community-associated methicillin-resistant Staphylococcus aureus (CA-MRSA) can harbor bacteriophages encoding Panton-Valentine leukocidin (PVL) as prophages.
- Six distinct PVL phages are known, with variations in PVL genes (SNPs) previously reported.
Purpose of the Study:
- To investigate the distribution of lysogenized PVL phages in PVL-MRSA strains.
- To analyze PVL gene sequences and identify chromosomal phage insertion sites across diverse MRSA clones.
Main Methods:
- Utilized PCR to identify six known PVL phages in 114 MRSA isolates from nine genetically diverse clones.
- Analyzed chromosomal insertion sites for PVL phages in 92 isolates, correlating them with specific clonal lineages (CCs and STs).
Main Results:
- ΦSa2USA was the most prevalent PVL phage, found in multiple lineages including CC1, CC5, CC8, and ST93.
- PVL phages exhibited lineage-specific chromosomal insertion sites: one locus for CC22, -30, -80, and a different locus for CC1, -5, -8, -59, -88, and ST93.
- Specific attachment motifs were identified at insertion sites, with minor sequence variations observed.
Conclusions:
- Established lineage-specific relationships between PVL phages, toxin genes, and chromosomal integration sites in MRSA.
- Findings offer critical insights into PVL-MRSA microepidemiology, aiding outbreak investigations and strain emergence prediction.
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