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Updated: Jun 6, 2026

Assembly and Purification of Prototype Foamy Virus Intasomes
Published on: March 19, 2018
Foamy retrovirus integrase contains a Pol dimerization domain required for protease activation
Eun-Gyung Lee1, Jacqueline Roy, Dana Jackson
1Division of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington 98109, USA.
Abstract:
Unlike orthoretroviruses, foamy retroviruses (FV) synthesize Pol independently of Gag. The FV Pol precursor is cleaved only once between reverse transcriptase (RT) and integrase (IN) by the protease (PR), resulting in a PR-RT and an IN protein. Only the Pol precursor, not the cleaved subunits, is packaged into virions. Like orthoretroviral PRs, FV PR needs to dimerize to be active. Previously, we showed that a Pol mutant lacking IN has defects in PR activity and Pol packaging into virions. We now show that introduction of a leucine zipper (zip) dimerization motif in an IN truncation mutant can restore PR activity, leading to Pol processing in cells. However, these zip mutants neither cleave Gag nor incorporate Pol into virions. We propose that IN is required for Pol dimerization, which is necessary for the creation of a functional PR active site.
Insights
Foamy retrovirus (FV) protease (PR) activity and Pol precursor packaging require integrase (IN). Introducing a dimerization motif restored PR activity but not virion packaging, suggesting IN is essential for Pol dimerization and PR activation.
Area of Science:
- Virology
- Molecular Biology
- Retroviral Research
Background:
- Foamy retroviruses (FV) differ from orthoretroviruses in Pol precursor synthesis and processing.
- FV Pol precursor is cleaved once by protease (PR) into PR-reverse transcriptase (RT) and integrase (IN) subunits.
- Only the uncleaved Pol precursor is incorporated into virions, and FV PR requires dimerization for activity.
Purpose of the Study:
- To investigate the role of integrase (IN) in foamy retrovirus (FV) Pol precursor processing and virion packaging.
- To determine if restoring protease (PR) dimerization can rescue PR activity and Pol processing in IN-deficient mutants.
Main Methods:
- Construction and analysis of IN truncation mutants with a leucine zipper (zip) dimerization motif.
- Assessment of protease (PR) activity and Pol precursor processing in cells expressing these mutants.
- Evaluation of Gag cleavage and Pol incorporation into virions.
Main Results:
- Introduction of a leucine zipper (zip) motif in an IN truncation mutant restored PR activity and Pol processing in cells.
- These zip mutants failed to cleave Gag or incorporate the Pol precursor into virions.
- The results indicate that IN is necessary for PR activity, even when dimerization is artificially restored.
Conclusions:
- Integrase (IN) is crucial for foamy retrovirus (FV) Pol precursor dimerization.
- Pol dimerization, mediated by IN, is essential for creating a functional protease (PR) active site.
- IN's role extends beyond its enzymatic function, influencing PR activation and virion packaging.
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