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Updated: Jun 6, 2026

Operating and Biocontainment Procedures of a Facility for Laboratory Mice with a Natural Microbiome: Immunophenotyping Procedure
Published on: December 13, 2024
Microbe hunting in laboratory animal research
Gustavo Palacio1, Thomas Briese, W Ian Lipkin
1Mailman School of Public Health, Columbia University, New York, NY 10032, USA. gp2050@columbia.edu
Nucleic acid diagnostics and genomic sequencing accelerate pathogen discovery in laboratory animals. This review covers surveillance, diagnostics, and challenges in linking microbes to disease.
Area of Science:
- Microbiology
- Genomics
- Infectious Diseases
Background:
- Nucleic acid diagnostic technologies have transformed microbiology.
- Genomic sequencing enables rapid discovery of new microbes.
- Laboratory animal research benefits from advanced pathogen surveillance.
Purpose of the Study:
- Review progress in pathogen surveillance and discovery.
- Focus on applications within laboratory animal research.
- Discuss challenges in establishing causality between organisms and disease.
Main Methods:
- Review of recent advances in nucleic acid diagnostics.
- Discussion of genomic sequencing technologies.
- Analysis of various assay platforms for viral diagnostics.
Main Results:
- Pathogen surveillance and diagnosis are enhanced by new technologies.
- Accelerated discovery of novel microbes is occurring.
- Strengths and limitations of different diagnostic platforms are evaluated.
Conclusions:
- Advanced diagnostics and sequencing are crucial for laboratory animal research.
- Establishing causal links between microbes and disease remains challenging.
- A staged diagnostic strategy is proposed for viral detection.
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