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Updated: Jun 6, 2026

Forward Genetic Approaches in Chlamydia trachomatis
Published on: October 23, 2013
Multi locus sequence typing of Chlamydia reveals an association between Chlamydia psittaci genotypes and host species
Yvonne Pannekoek1, Veerle Dickx, Delphine S A Beeckman
1Department of Medical Microbiology, Academic Medical Center, Amsterdam, The Netherlands.
Abstract:
Chlamydia comprises a group of obligate intracellular bacterial parasites responsible for a variety of diseases in humans and animals, including several zoonoses. Chlamydia trachomatis causes diseases such as trachoma, urogenital infection and lymphogranuloma venereum with severe morbidity. Chlamydia pneumoniae is a common cause of community-acquired respiratory tract infections. Chlamydia psittaci, causing zoonotic pneumonia in humans, is usually hosted by birds, while Chlamydia abortus, causing abortion and fetal death in mammals, including humans, is mainly hosted by goats and sheep. We used multi-locus sequence typing to asses the population structure of Chlamydia. In total, 132 Chlamydia isolates were analyzed, including 60 C. trachomatis, 18 C. pneumoniae, 16 C. abortus, 34 C. psittaci and one of each of C. pecorum, C. caviae, C. muridarum and C. felis. Cluster analyses utilizing the Neighbour-Joining algorithm with the maximum composite likelihood model of concatenated sequences of 7 housekeeping fragments showed that C. psittaci 84/2334 isolated from a parrot grouped together with the C. abortus isolates from goats and sheep. Cluster analyses of the individual alleles showed that in all instances C. psittaci 84/2334 formed one group with C. abortus. Moving 84/2334 from the C. psittaci group to the C. abortus group resulted in a significant increase in the number of fixed differences and elimination of the number of shared mutations between C. psittaci and C. abortus. C. psittaci M56 from a muskrat branched separately from the main group of C. psittaci isolates. C. psittaci genotypes appeared to be associated with host species. The phylogenetic tree of C. psittaci did not follow that of its host bird species, suggesting host species jumps. In conclusion, we report for the first time an association between C. psittaci genotypes with host species.
Insights
This study reveals a surprising association between Chlamydia psittaci genotypes and host species, challenging previous classifications. A specific Chlamydia psittaci strain grouped with Chlamydia abortus, indicating potential host-driven evolutionary shifts.
Area of Science:
- Bacteriology
- Genomics
- Zoonotic Diseases
Background:
- Chlamydia are obligate intracellular bacteria causing significant human and animal diseases.
- Species like C. trachomatis, C. pneumoniae, C. psittaci, and C. abortus have distinct clinical manifestations and hosts.
- Understanding Chlamydia population structure is crucial for disease control and public health.
Purpose of the Study:
- To investigate the population structure and genetic diversity of various Chlamydia species.
- To clarify the phylogenetic relationships between Chlamydia species, particularly C. psittaci and C. abortus.
- To explore the influence of host species on Chlamydia genotype evolution.
Main Methods:
- Multi-locus sequence typing (MLST) was employed to analyze 132 Chlamydia isolates.
- Housekeeping gene fragments were concatenated and analyzed using Neighbour-Joining algorithm and maximum composite likelihood model.
- Cluster analyses were performed on both concatenated sequences and individual alleles.
Main Results:
- A Chlamydia psittaci isolate (84/2334) from a parrot clustered with Chlamydia abortus isolates from goats and sheep.
- This reclassification significantly increased genetic differences between C. psittaci and C. abortus.
- Chlamydia psittaci genotypes showed association with host species, with evidence of host species jumps.
Conclusions:
- The study provides the first evidence of an association between Chlamydia psittaci genotypes and host species.
- Phylogenetic analysis suggests host-driven evolution and potential host-switching events in Chlamydia.
- These findings necessitate a re-evaluation of Chlamydia taxonomy and host-pathogen dynamics.
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