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Updated: Jun 5, 2026

Identification of Rare Bacterial Pathogens by 16S rRNA Gene Sequencing and MALDI-TOF MS
Published on: July 11, 2016
Cardiobacterium valvarum infective endocarditis and phenotypic/molecular characterization of 11 Cardiobacterium
Ming Chen1,2, Michael Kemp3,2, Niels E Bruun4
1Department of Clinical Microbiology, Rigshospitalet, Copenhagen, Denmark.
Insights
Cardiobacterium valvarum, a rare cause of infective endocarditis, was identified in a patient. Phenotypic and genetic analysis distinguished it from Cardiobacterium hominis.
Area of Science:
- Microbiology
- Infectious Diseases
- Genetics
Background:
- Cardiobacterium valvarum is an emerging pathogen linked to infective endocarditis.
- Infections caused by Cardiobacterium species are infrequent.
- This study investigates a case of infective endocarditis and compares Cardiobacterium species.
Observation:
- A 64-year-old male presented with infective endocarditis of the mitral valve, involving chordae rupture and pulmonary valve prolapse.
- Cardiobacterium valvarum was isolated from blood, with DNA detected in valvular tissue.
- Surgical intervention included mechanical mitral valve replacement and neochordae insertion.
Findings:
- Phenotypic analysis revealed that Cardiobacterium hominis strains tested positive for phenylphosphonate, while Cardiobacterium valvarum strains tested negative using the Vitek 2 Neisseria-Haemophilus identification card.
- Phylogenetic analysis based on 16S rRNA gene sequences clearly separated the two species into distinct clusters.
- These findings establish a method for differentiating between the two Cardiobacterium species.
Implications:
- Accurate differentiation of Cardiobacterium species is crucial for appropriate diagnosis and treatment of infective endocarditis.
- The Vitek 2 Neisseria-Haemophilus identification card offers a reliable phenotypic method for distinguishing C. hominis from C. valvarum.
- Further research into the pathogenicity and clinical significance of Cardiobacterium species is warranted.
Abstract:
Cardiobacterium valvarum is a newly recognized human pathogen related to infective endocarditis. Cardiobacterium species are, however, only rarely the aetiology of infective endocarditis. An infective endocarditis case is presented and, additionally, phenotypic and phylogenetic comparison of a further 10 collection strains, representing the two species within the genus, was performed. C. valvarum was isolated from the blood and DNA was present in valvular tissue (partial 16S rRNA gene analysis) from a 64-year-old man with infective endocarditis of the mitral valve, rupture of chordae and prolapse of pulmonary valves in addition to a fluttering excrescence. A mechanical mitral valve and neochordae were inserted successfully. Phenotypically, the two species within the genus Cardiobacterium resemble each other greatly. When using the Vitek 2 Neisseria-Haemophilus identification card, the reaction for phenylphosphonate was positive for all Cardiobacterium hominis strains, but negative for all C. valvarum strains, thereby separating the two species. The two species made up two separate clusters by phylogenetic examination using 16S rRNA gene sequence analysis.
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