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Related Concept Videos

Protein Complex Assembly02:41

Protein Complex Assembly

Proteins can form homomeric complexes with another unit of the same protein or heteromeric complexes with different types.  Most protein complexes self-assemble spontaneously via ordered pathways, while some proteins need assembly factors that guide their proper assembly. Despite the crowded intracellular environment, proteins usually interact with their correct partners and form functional complexes.
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Viral Structure

Viruses are extraordinarily diverse in shape and size, but they all have several structural features in common. All viruses have a core that contains a DNA- or RNA-based genome. The core is surrounded by a protective coat of proteins called the capsid. The capsid is composed of subunits called capsomeres. The capsid and genome-containing core are together known as the nucleocapsid.
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As part of their replication cycle, certain viruses synthesize long precursor proteins called polyproteins within infected host cells. In human immunodeficiency virus (HIV), two major polyproteins are produced: Gag and Gag-Pol. The Gag polyprotein supplies the structural components of the virus, while Gag-Pol includes essential viral enzymes such as reverse transcriptase, integrase, and protease. After synthesis, these polyproteins move to the host cell membrane, where they assemble into an...
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Size and Structure of Viral Genomes

Viral genomes exhibit remarkable diversity in size, structure, and composition, influencing their replication strategies and interactions with host cells. These genomes consist of either DNA or RNA and may be linear or circular. Additionally, they can be single-stranded or double-stranded, with each configuration affecting how the virus propagates within a host. RNA viruses, for instance, generally have smaller genomes than DNA viruses, a factor that contributes to their high mutation rates and...
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Vesicle budding is orchestrated by distinct cytosolic proteins such as adaptor proteins, coat proteins, and GTPases. To initiate vesicle budding, membrane-bending proteins containing crescent-shaped BAR domains bind to the lipid heads in the bilayer and distort the membrane to form a protein-coated vesicle bud. Adaptors proteins such as AP2 for clathrin-coated vesicles can nucleate on the deformed membrane. Finally, coat proteins such as clathrin or COPI and COPII assemble into a coat forming...
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Self-Assembly of Gamma-Modified Peptide Nucleic Acids into Complex Nanostructures in Organic Solvent Mixtures
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Generation-dependent molecular recognition controls self-assembly in supramolecular dendron-virus complexes.

Giovanni Doni1, Mauri A Kostiainen, Andrea Danani

  • 1University of Applied Sciences of Southern Switzerland (SUPSI)-Mathematical and Physical Sciences Research Unit (SMF), Manno, Switzerland.

Nano Letters
|December 22, 2010
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Summary

Molecular dynamics simulations reveal how dendron generation controls virus self-assembly. This research enables precise engineering of hierarchical self-assemblies by manipulating single-molecule interactions.

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Generation and Assembly of Virus-Specific Nucleocapsids of the Respiratory Syncytial Virus

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Area of Science:

  • Biophysics
  • Materials Science
  • Nanotechnology

Background:

  • Multivalent molecular recognition plays a key role in biological systems.
  • Controlling self-assembly at the nanoscale is crucial for materials engineering.

Purpose of the Study:

  • To investigate the relationship between dendron-virus interactions and self-assembly.
  • To understand how dendron generation influences the strength and nature of self-assembly.

Main Methods:

  • Utilizing molecular dynamics simulations.
  • Analyzing multivalent molecular recognition between dendrons and viruses.

Main Results:

  • A direct correlation was identified between dendron-virus recognition and self-assembly behavior.
  • The strength of self-assembly transitions from weak hydrophobic association to strong electrostatic interactions based on dendron generation.
  • Higher dendron generations lead to significantly stronger electrostatic self-assembly.

Conclusions:

  • Dendron generation is a critical factor in directing virus self-assembly.
  • This work provides a new pathway for engineering hierarchical self-assemblies with tunable properties.
  • Control over supramolecular properties can be achieved by manipulating single-molecule interactions.