Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

RNA-seq03:21

RNA-seq

RNA sequencing, or RNA-Seq, is a high-throughput sequencing technology used to study the transcriptome of a cell. Transcriptomics helps to interpret the functional elements of a genome and identify the molecular constituents of an organism. Additionally, it also helps in understanding the development of an organism and the occurrence of diseases. 
Before the discovery of RNA-seq, microarray-based methods and Sanger sequencing were used for transcriptome analysis. However, while microarray-based...
Genome Annotation and Assembly03:36

Genome Annotation and Assembly

The genome refers to all of the genetic material in an organism. It can range from a few million base pairs in microbial cells to several billion base pairs in many eukaryotic organisms. Genome assembly refers to the process of taking the DNA sequencing data and putting it all back together in a correct order to create a close representation of the original genome. This is followed by the identification of functional elements on the newly assembled genome, a process called genome annotation.

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Optimizing Postoperative Prognostication in Duodenal Adenocarcinoma: A Multicenter Study with External Validation.

The oncologist·2026
Same author

Brassinosteroid signaling regulates shoot apical meristem homeostasis via orchestrating cytokinin and WUSCHEL activity.

Science advances·2026
Same author

AGR2-high cells drive a FOXM1-mediated pro-malignancy program in non-functional pancreatic neuroendocrine tumors (NF-PanNETs) and informatively predict patient outcomes.

Science bulletin·2026
Same author

Methodological comparison of capillary and venous blood parameters in pediatric <i>Mycoplasma pneumoniae</i> pneumonia: a prospective study with exploratory machine learning assessment.

Translational pediatrics·2026
Same author

Genomics meets metabolomics: decoding <i>Arnebia tschimganica</i> and the shikonin biosynthesis pathway.

Horticulture research·2026
Same author

Hierarchical Amplification-Interlinked CRISPR-Cas14a Luminescent Biosensor Coupled with Portable Photonic Crystal Biochip-Boosted Time-Delayed Signaling for the Diagnosis of Pediatric <i>Mycoplasma pneumoniae</i> Pneumonia.

Analytical chemistry·2026

Related Experiment Video

Updated: Jun 5, 2026

Biomarker Identification for Gender Specificity of Alzheimer's Disease Based on the Glial Transcriptome Profiles
04:22

Biomarker Identification for Gender Specificity of Alzheimer's Disease Based on the Glial Transcriptome Profiles

Published on: May 20, 2024

A web-based platform for rice microarray annotation and data analysis.

Dijun Chen1, Fan Zhang, Chunhui Yuan

  • 1College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150086, China.

Science China. Life Sciences
|December 25, 2010
PubMed
Summary
This summary is machine-generated.

A new web platform offers integrated analysis and annotation for rice microarray data, aiding researchers in understanding gene functions and biological pathways. This tool enhances rice research by providing comprehensive bioinformatics analysis.

Related Experiment Videos

Last Updated: Jun 5, 2026

Biomarker Identification for Gender Specificity of Alzheimer's Disease Based on the Glial Transcriptome Profiles
04:22

Biomarker Identification for Gender Specificity of Alzheimer's Disease Based on the Glial Transcriptome Profiles

Published on: May 20, 2024

Area of Science:

  • Agricultural Science
  • Bioinformatics
  • Genomics

Background:

  • Rice (Oryza sativa) is a crucial global food source, necessitating advanced tools for its genetic and molecular research.
  • Existing databases often lack integrated annotation and analysis capabilities for rice microarray data.

Purpose of the Study:

  • To develop a comprehensive, web-based integrated platform for rice microarray data annotation and analysis.
  • To provide convenient querying and advanced bioinformatics analysis methods for rice gene expression studies.

Main Methods:

  • The platform integrates five modules: BioChip (data retrieval), BioAnno (gene/probe set annotation), BioSeq (sequence information), BioView (results visualization), and BioAnaly (data analysis).
  • Utilizes identifiers like "Probe Set ID", "Locus ID", and "Analysis Name" for efficient data retrieval.
  • Annotation includes gene function, domain information, KEGG pathways, and potential microRNA regulation.

Main Results:

  • The developed platform offers a more convenient query system for comprehensive annotation compared to existing databases.
  • Provides integrated online bioinformatics analysis methods for rice microarray datasets.
  • Facilitates diverse analyses including gene function, pathway mapping, and sequence retrieval.

Conclusions:

  • The integrated platform significantly enhances the accessibility and utility of rice microarray data for biological research.
  • Empowers researchers with robust bioinformatics tools for deeper insights into rice genetics and molecular biology.
  • A valuable resource for advancing agricultural science and food security through improved rice research.