Primary cells and stem cells in drug discovery: emerging tools for high-throughput screening
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Updated: Jun 5, 2026

High Content Screening in Neurodegenerative Diseases
Published on: January 6, 2012
1Bio-discovery, PerkinElmer, Waltham, Massachusetts 02451-1457, USA. richard.eglen@perkinelmer.com
Abstract:
Many drug discovery screening programs employ immortalized cells, recombinantly engineered to express a defined molecular target. Several technologies are now emerging that render it feasible to employ more physiologically, and clinically relevant, cell phenotypes. Consequently, numerous approaches use primary cells, which retain many functions seen in vivo, as well as endogenously expressing the target of interest. Furthermore, stem cells, of either embryonic or adult origin, as well as those derived from differentiated cells, are now finding a place in drug discovery. Collectively, these cells are expanding the utility of authentic human cells, either as screening tools or as therapeutics, as well as providing cells derived directly from patients. Nonetheless, the growing use of phenotypically relevant cells (including primary cells or stem cells) is not without technical difficulties, particularly when their envisioned use lies in high-throughput screening (HTS) protocols. In particular, the limited availability of homogeneous primary or stem cell populations for HTS mandates that novel technologies be developed to accelerate their adoption. These technologies include detection of responses with very few cells as well as protocols to generate cell lines in abundant, homogeneous populations. In parallel, the growing use of changes in cell phenotype as the assay readout is driving greater use of high-throughput imaging techniques in screening. Taken together, the greater availability of novel primary and stem cell phenotypes as well as new detection technologies is heralding a new era of cellular screening. This convergence offers unique opportunities to identify drug candidates for disorders at which few therapeutics are presently available.
Insights
New cell technologies, including primary and stem cells, enhance drug discovery screening. These authentic human cells offer physiological relevance but require novel high-throughput screening (HTS) methods for broader adoption.
Area of Science:
- Cell biology
- Drug discovery
- Biotechnology
Background:
- Traditional drug discovery relies on immortalized cell lines, which may lack physiological relevance.
- Emerging technologies enable the use of more clinically relevant cell phenotypes, including primary and stem cells.
- These authentic human cells offer endogenous target expression and patient-derived options.
Purpose of the Study:
- To explore the expanding utility of phenotypically relevant cells in drug discovery.
- To address the technical challenges associated with using primary and stem cells in high-throughput screening (HTS).
- To highlight novel detection technologies facilitating the adoption of these advanced cellular models.
Main Methods:
- Utilizing primary cells and stem cells (embryonic and adult) for drug screening.
- Developing novel technologies for cell response detection with minimal cell numbers.
- Implementing protocols for generating abundant, homogeneous cell populations.
- Leveraging high-throughput imaging techniques for phenotypic assay readouts.
Main Results:
- Phenotypically relevant cells, including primary and stem cells, are increasingly used in drug discovery.
- Technical challenges in HTS with these cells are being addressed by new technologies.
- Advancements in detection and cell generation are accelerating the adoption of authentic human cells.
Conclusions:
- The convergence of novel cell phenotypes and advanced detection technologies marks a new era in cellular screening.
- This advancement provides unique opportunities to discover drug candidates for currently untreatable disorders.
- The use of authentic human cells promises to expand therapeutic options and improve patient outcomes.
Related Concept Videos
Drug Discovery: Overview
EPS and iPS Cells in Disease Research

