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Updated: Jun 5, 2026

Microbiological Rapid On-Site Evaluation for Pulmonary Infectious Diseases
Published on: March 1, 2024
Impact of PCR for respiratory viruses on antibiotic use: theory and practice
Alma C van de Pol1, Tom F W Wolfs, Carline E A Tacke
1Division of Infectious Diseases, Department of Pediatrics, University Medical Center Utrecht, Utrecht, The Netherlands; Department of Virology, University Medical Center Utrecht, Utrecht, The Netherlands.
Insights
Real-time PCR testing for respiratory viruses did not change antibiotic prescribing habits in pediatric intensive care unit physicians for ventilated children with lower respiratory tract infections, despite survey data suggesting it would reduce antibiotic use.
Area of Science:
- Pediatric Infectious Diseases
- Clinical Microbiology
- Critical Care Medicine
Background:
- Real-time polymerase chain reaction (PCR) offers higher sensitivity for respiratory virus detection than direct immunofluorescence (DIF).
- The cost-effectiveness and clinical impact of integrating real-time PCR into antibiotic prescribing protocols for pediatric lower respiratory tract infections (LRTI) remain under investigation.
Purpose of the Study:
- To assess the impact of additional real-time PCR testing on antibiotic prescriptions in ventilated children with LRTI admitted to the pediatric intensive care unit (PICU).
Main Methods:
- A multicenter survey study was conducted, followed by a prospective study involving children (≤ 5 years) with LRTI.
- Patients were tested via DIF and PCR upon PICU admission; antibiotic treatment was evaluated before and after PCR result disclosure.
Main Results:
- Survey data indicated PCR use would decrease antibiotic prescriptions (P < 0.001).
- In the prospective study (38 children), 19 were DIF positive. Among 19 DIF-negative patients, 12 received antibiotics pre-PCR disclosure, with 9 testing positive via PCR.
- Disclosure of PCR results did not alter antibiotic treatment decisions in the prospective cohort.
Conclusions:
- Contrary to survey expectations, real-world PICU physician antibiotic prescribing for ventilated children with LRTI was not influenced by the results of additional respiratory real-time PCR testing.
- The integration of sensitive diagnostic tools like real-time PCR may not directly translate to changes in clinical practice regarding antibiotic stewardship in critically ill children.
Rationale For The Study:
Real-time polymerase chain reaction (PCR) for respiratory viruses is more sensitive, yet more expensive, than conventionally used direct immunofluorescence (DIF). We determined the impact of real-time PCR, additional to DIF, on antibiotic prescription in ventilated children with lower respiratory tract infection (LRTI) at admission to the pediatric intensive care unit (PICU).
Methods:
First, a multicenter survey study was performed. Subsequently, in a prospective study, children (≤ 5 years) with LRTI were tested at admission by DIF and PCR. Positive DIF results were reported at the end of the first working day. PICU physicians reported antibiotic treatment on the second working day. After informing them of the PCR result antibiotic treatment was reevaluated.
Results:
The multicenter survey study (94 respondents) showed that PCR decreased antibiotic use (P < 0.001). In the prospective study 38 children were included, of which 19 (50%) were DIF positive. Of the 19 DIF negative patients 12 (63%) were treated with antibiotics before revealing the PCR result; the PCR test was positive in 9 out of 12. Revealing PCR results did not alter antibiotic treatment. In 7 DIF negative patients antibiotics not given, the PCR test was positive.
Conclusion:
In contrast to their responses to the survey study, in real-life PICU physicians did not let their antibiotic prescription be influenced by respiratory real-time PCR in children ventilated for LRTI.
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