Intact cag pathogenicity island of Helicobacter pylori without disease association in Kolkata, India
Rajashree Patra1, Santanu Chattopadhyay, Ronita De
1National Institute of Cholera and Enteric Diseases, Kolkata 700010, India.
Insights
Helicobacter pylori strains from Kolkata show intact cag pathogenicity island (cag PAI) genes, even in asymptomatic individuals. Genetic structure differences in cag PAI were not significant between duodenal ulcer and non-ulcer dyspepsia patients.
Area of Science:
- Microbiology
- Genetics
- Gastroenterology
Background:
- The cag pathogenicity island (cag PAI) of Helicobacter pylori, particularly the cagA gene, is linked to gastroduodenal diseases.
- Variations in cag PAI genetic structure may influence clinical outcomes of H. pylori infections.
- Understanding cag PAI in different geographical regions is crucial for disease association studies.
Purpose of the Study:
- To characterize the cag PAI of H. pylori strains from duodenal ulcer (DU) and asymptomatic/non-ulcer dyspepsia (NUD/AV) individuals in Kolkata, India.
- To investigate potential correlations between cag PAI genetic structure and clinical outcomes in this population.
Main Methods:
- Analysis of H. pylori strains from 52 individuals (30 DU, 22 NUD/AV) using PCR with 83 primers for the entire cag PAI.
- Dot-blot hybridization and RT-PCR to confirm gene presence, promoter activity, and mRNA expression (cagA, HP0527).
- Western blot analysis to detect CagA protein expression and assess type IV secretion system functionality.
Main Results:
- A high prevalence of intact cag PAI (82.6%) was observed in Kolkata strains, with partial deletions (9.6%) and complete absence (7.7%) also noted.
- Intact cagA promoter regions were present in all cagA-positive strains, and cagA mRNA expression was confirmed in both DU and NUD/AV groups.
- No significant differences in cag PAI genetic structure were found between DU and NUD/AV patients, suggesting other factors influence disease outcome.
Conclusions:
- H. pylori strains from Kolkata frequently possess intact cag PAI, including functional cagA and type IV secretion systems, irrespective of disease status.
- The genetic structure of cag PAI alone does not appear to be the sole determinant of gastroduodenal disease in this population.
- Host susceptibility and environmental factors likely play a significant role in modulating H. pylori-associated disease outcomes in this geographical context.
Abstract:
Several genes including the cagA in the cag pathogenicity island (cag PAI) of Helicobacter pylori are thought to be associated with the gastroduodenal diseases and hence variation in the genetic structure of the cag PAI might be responsible for different clinical outcomes. Our study was undertaken to characterize the cag PAI of H. pylori strains from duodenal ulcer (DU) patients and asymptomatic or non-ulcer dyspepsia (NUD/AV) subjects from Kolkata, India. Strains isolated from 52 individuals (30DU and 22NUD/AV) were analyzed by PCR using 83 different primers for the entire cag PAI and also by dot-blot hybridization. Unlike H. pylori strains isolated from other parts of India, 82.6% of the strains used in this study had intact cag PAI, 9.6% had partially deleted cag PAI, and 7.7% of the strains lacked the entire cag PAI. Dot-blot hybridization yielded positive signals in 100% and 93.8% of PCR-negative strains for HP0522-523 and HP0532-HP0534 genes, respectively. An intact cagA promoter region was also detected in all cagA-positive strains. Furthermore, the expression of cagA mRNA was confirmed by RT-PCR for the representative strains from both DU and NUD/AV subjects indicating the active cagA promoter regions of these strains. A total of 66.7% of Kolkata strains produced a ∼390-bp shorter amplicon than the standard strain 26695 for the HP0527 gene, homologue of virB10. However, sequence analyses confirmed that the deletion did not alter the reading frame of the gene, and mRNA transcripts were detected by RT-PCR analysis. The strains isolated from DU and NUD/AV express CagA protein and possess a functional type IV secretion system, as revealed by Western blot analyses. Interestingly, no significant differences in cag PAI genetic structure were found between DU and NUD/AV individuals suggesting that other bacterial virulence factors, host susceptibility, and environmental determinants also influence the disease outcome at least in certain geographical locations.
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