Related Experiment Video
Updated: Jun 5, 2026

Preparation and In Vivo Use of an Activity-based Probe for N-acylethanolamine Acid Amidase
Published on: November 23, 2016
(E)-2-(2,6-Dichloro-phen-yl)-2-(phenyl-imino)acetamide
1Institute for Molecular Science, Myodaiji, Okazaki 444-8585, Japan.
This study details the crystal structure of a synthetic precursor for a human immunodeficiency virus type 1 (HIV-1) inhibitor. Molecular interactions and hydrogen bonding reveal insights into its potential therapeutic applications.
Area of Science:
- Medicinal Chemistry
- Crystallography
- Organic Synthesis
Background:
- The development of novel inhibitors for human immunodeficiency virus type 1 (HIV-1) is crucial for public health.
- Understanding the structural properties of synthetic precursors can guide the design of more effective drugs.
- The title compound, C(14)H(10)Cl(2)N(2)O, serves as a key intermediate in the synthesis of potential HIV-1 inhibitors.
Purpose of the Study:
- To elucidate the crystal structure of the title compound, C(14)H(10)Cl(2)N(2)O.
- To analyze the molecular conformation and intermolecular interactions within the crystal lattice.
- To provide structural insights relevant to its role as a precursor for HIV-1 inhibitors.
Main Methods:
- Single-crystal X-ray diffraction was employed to determine the three-dimensional structure.
- Analysis of bond lengths, bond angles, and dihedral angles.
- Identification and characterization of intermolecular interactions, including hydrogen bonds and C-H interactions.
Main Results:
- The crystal structure reveals a dihedral angle of 69.4(1)° between the 2,6-dichlorophenyl ring and the phenyl ring.
- Molecules form centrosymmetric dimers through N-H⋯O hydrogen bonds, adopting an R(2)(2)(8) motif.
- Intermolecular C-H⋯O and C-H⋯π interactions further stabilize the crystal packing.
Conclusions:
- The determined crystal structure provides a detailed molecular blueprint of the HIV-1 inhibitor precursor.
- The observed hydrogen bonding and other non-covalent interactions are critical for understanding molecular assembly and stability.
- This structural information can inform future drug design and optimization strategies for HIV-1 therapies.
More Related Videos
Related Concept Videos
Nomenclature of Carboxylic Acid Derivatives: Amides and Nitriles
The IUPAC and common names of amides are derived from the parent carboxylic acid, by replacing the suffix “oic acid” and “ic acid,” respectively, with “amide.” In the following example, the IUPAC name ethanamide is derived from ethanoic acid, and the common name, acetamide, is obtained from acetic acid.
Structures of Carboxylic Acid Derivatives
Carboxylic acid derivatives contain an acyl group attached to a heteroatom such as chlorine, oxygen, or nitrogen. The carbonyl carbon and oxygen are both sp2-hybridized with an unhybridized p orbital.
The three sp2 orbitals of the carbonyl carbon form three σ bonds, one each with the carbonyl oxygen, the α carbon, and the heteroatom, whereas the other two sp2 orbitals of the carbonyl oxygen are occupied by the lone pairs. Further, the unhybridized p...
Amines to Amides: Acylation of Amines
Next, the second equivalent of amine serves as a Brønsted base and deprotonates the quaternary amide...
Alkylation of β-Ketoester Enolates: Acetoacetic Ester Synthesis
Carboxylic Acid Derivatives: Overview
Carboxylic Acids to Methylesters: Alkylation using Diazomethane

