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SQID: an intensity-incorporated protein identification algorithm for tandem mass spectrometry

Wenzhou Li1, Li Ji, Jonathan Goya

  • 1Department of Chemistry and Biochemistry, University of Arizona, Tucson, Arizona 85721, United States.

Journal of Proteome Research
|January 6, 2011
PubMed
Summary

A new algorithm, SeQuence IDentfication (SQID), improves protein identification in proteomics by utilizing peptide fragmentation intensity data. This approach enhances confidence and increases the number of identified peptides compared to existing methods.

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