A model-free, fully automated baseline-removal method for Raman spectra
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Updated: Jun 5, 2026

Resolving Water, Proteins, and Lipids from In Vivo Confocal Raman Spectra of Stratum Corneum through a Chemometric Approach
Published on: September 26, 2019
H Georg Schulze1, Rod B Foist, Kadek Okuda
1Michael Smith Laboratories, The University of British Columbia, 2185 East Mall, Vancouver, BC, Canada, V6T 1Z4.
Abstract:
We present here a fully automated spectral baseline-removal procedure. The method uses a large-window moving average to estimate the baseline; thus, it is a model-free approach with a peak-stripping method to remove spectral peaks. After processing, the baseline-corrected spectrum should yield a flat baseline and this endpoint can be verified with the χ(2)-statistic. The approach provides for multiple passes or iterations, based on a given χ(2)-statistic for convergence. If the baseline is acceptably flat given the χ(2)-statistic after the first pass at correction, the problem is solved. If not, the non-flat baseline (i.e., after the first effort or first pass at correction) should provide an indication of where the first pass caused too much or too little baseline to be subtracted. The second pass thus permits one to compensate for the errors incurred on the first pass. Thus, one can use a very large window so as to avoid affecting spectral peaks--even if the window is so large that the baseline is inaccurately removed--because baseline-correction errors can be assessed and compensated for on subsequent passes. We start with the largest possible window and gradually reduce it until acceptable baseline correction based on the χ(2) statistic is achieved. Results, obtained on both simulated and measured Raman data, are presented and discussed.
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