SET8 is degraded via PCNA-coupled CRL4(CDT2) ubiquitylation in S phase and after UV irradiation
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Updated: Jun 5, 2026

Cycloheximide Chase Analysis of Protein Degradation in Saccharomyces cerevisiae
Published on: April 18, 2016
Stine Jørgensen1, Morten Eskildsen, Kasper Fugger
1Biotech Research and Innovation Centre, University of Copenhagen, Copenhagen, Denmark.
Abstract:
The eukaryotic cell cycle is regulated by multiple ubiquitin-mediated events, such as the timely destruction of cyclins and replication licensing factors. The histone H4 methyltransferase SET8 (Pr-Set7) is required for chromosome compaction in mitosis and for maintenance of genome integrity. In this study, we show that SET8 is targeted for degradation during S phase by the CRL4(CDT2) ubiquitin ligase in a proliferating cell nuclear antigen (PCNA)-dependent manner. SET8 degradation requires a conserved degron responsible for its interaction with PCNA and recruitment to chromatin where ubiquitylation occurs. Efficient degradation of SET8 at the onset of S phase is required for the regulation of chromatin compaction status and cell cycle progression. Moreover, the turnover of SET8 is accelerated after ultraviolet irradiation dependent on the CRL4(CDT2) ubiquitin ligase and PCNA. Removal of SET8 supports the modulation of chromatin structure after DNA damage. These results demonstrate a novel regulatory mechanism, linking for the first time the ubiquitin-proteasome system with rapid degradation of a histone methyltransferase to control cell proliferation.
Insights
The cell cycle regulator SET8 is degraded during S phase by the CRL4(CDT2) ubiquitin ligase and proliferating cell nuclear antigen (PCNA). This degradation controls chromatin compaction and cell cycle progression, especially after DNA damage.
Area of Science:
- Cell Biology
- Molecular Biology
- Biochemistry
Background:
- The eukaryotic cell cycle involves ubiquitin-mediated events for regulating key proteins.
- Histone H4 methyltransferase SET8 (Pr-Set7) is crucial for chromosome compaction and genome integrity.
Purpose of the Study:
- To investigate the regulatory mechanism controlling SET8 levels during the cell cycle.
- To determine the role of ubiquitylation in SET8 regulation and its impact on cell proliferation.
Main Methods:
- Utilized techniques to study protein degradation pathways.
- Investigated the interaction between SET8, CRL4(CDT2) ubiquitin ligase, and proliferating cell nuclear antigen (PCNA).
- Analyzed SET8 ubiquitylation and degradation in response to cell cycle progression and DNA damage.
Main Results:
- SET8 is degraded during S phase via the CRL4(CDT2) ubiquitin ligase in a PCNA-dependent manner.
- A specific degron in SET8 mediates its interaction with PCNA and recruitment to chromatin for ubiquitylation.
- SET8 degradation is essential for proper chromatin compaction and cell cycle progression.
- SET8 turnover is enhanced after UV irradiation, involving CRL4(CDT2) and PCNA, aiding chromatin structure modulation post-DNA damage.
Conclusions:
- Established a novel mechanism linking the ubiquitin-proteasome system to the rapid degradation of a histone methyltransferase (SET8).
- Demonstrated that SET8 degradation is a critical regulatory step for controlling cell proliferation and chromatin dynamics.
- Highlighted the role of SET8 turnover in responding to DNA damage and maintaining genome stability.
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