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Updated: Jun 5, 2026

Evaluation of Substrate Ubiquitylation by E3 Ubiquitin-ligase in Mammalian Cell Lysates
Published on: May 10, 2022
Nucleolar targeting of the fbw7 ubiquitin ligase by a pseudosubstrate and glycogen synthase kinase 3
Markus Welcker1, Elizabeth A Larimore, Lori Frappier
1Fred Hutchinson Cancer Research Center, Mailstop D2-100, 1100 Fairview Ave. N, Seattle, WA 98109, USA.
Abstract:
E3 ubiquitin ligases catalyze protein degradation by the ubiquitin-proteasome system, and their activity is tightly controlled. One level of regulation involves subcellular localization, and the Fbw7 tumor suppressor exemplifies this type of control. Fbw7 is the substrate-binding component of an SCF ubiquitin ligase that degrades critical oncoproteins. Alternative splicing produces three Fbw7 protein isoforms that occupy distinct compartments: Fbw7α is nucleoplasmic, Fbw7β is cytoplasmic, and Fbw7γ is nucleolar. We found that cancer-associated Fbw7 mutations that disrupt substrate binding prevent Fbw7γ nucleolar localization, implicating a substrate-like interaction in nucleolar targeting. We identified EBNA1-binding protein 2 (Ebp2) as the critical nucleolar factor that directly mediates Fbw7 nucleolar targeting. Ebp2 binds to Fbw7 like a substrate, and this is mediated by an Ebp2 degron that is phosphorylated by glycogen synthase kinase 3. However, despite these canonical substrate-like interactions, Fbw7 binding is largely uncoupled from Ebp2 turnover in vivo. Ebp2 thus acts like a pseudosubstrate that directly recruits Fbw7 to nucleoli.
Insights
Fbw7, a tumor suppressor, is guided to the nucleolus by Ebp2, a protein that mimics a substrate. This interaction is crucial for regulating Fbw7
Area of Science:
- Cellular Biology
- Molecular Biology
- Cancer Research
Background:
- E3 ubiquitin ligases control protein degradation via the ubiquitin-proteasome system.
- Fbw7, a tumor suppressor, is a key component of an SCF ubiquitin ligase targeting oncoproteins.
- Alternative splicing generates Fbw7 isoforms with distinct subcellular localizations (Fbw7α, Fbw7β, Fbw7γ).
Purpose of the Study:
- To investigate the mechanism of Fbw7γ nucleolar localization.
- To identify factors mediating Fbw7's targeting to the nucleolus.
- To understand the role of substrate-like interactions in Fbw7 localization.
Main Methods:
- Analysis of cancer-associated Fbw7 mutations.
- Identification of proteins interacting with Fbw7 in the nucleolus.
- Phosphorylation site analysis of Ebp2.
- In vivo studies of protein turnover.
Main Results:
- Cancer-associated Fbw7 mutations disrupting substrate binding also disrupt Fbw7γ nucleolar localization.
- EBNA1-binding protein 2 (Ebp2) was identified as the factor responsible for Fbw7 nucleolar targeting.
- Ebp2 binds Fbw7 via a phosphorylated degron, mimicking a substrate interaction.
- Fbw7 binding to Ebp2 is uncoupled from Ebp2 degradation in vivo.
Conclusions:
- Ebp2 acts as a pseudosubstrate, directly recruiting Fbw7 to the nucleolus.
- This mechanism highlights a novel regulatory pathway for Fbw7 localization and function.
- Understanding this interaction is critical for comprehending Fbw7's role in tumor suppression.
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