Related Experiment Video
Updated: Jun 5, 2026

Microbiologically Induced Calcite Precipitation Mediated by Sporosarcina pasteurii
Published on: April 16, 2016
Simulating calcium salt precipitation in the nephron using chemical speciation
Allen L Rodgers1, Shameez Allie-Hamdulay, Graham Jackson
1Department of Chemistry, University of Cape Town, Cape Town, South Africa. Allen.rodgers@uct.ac.za
Theoretical modeling suggests hydroxyapatite (HAP) precipitation in the nephron may lead to pure HAP stones, while other calcium oxalate (CaOx) and calcium phosphate (CaP) salt precipitation could form mixed stones, impacting kidney stone composition.
Area of Science:
- Nephrology
- Biochemistry
- Computational Chemistry
Background:
- Calcium renal stone formation is hypothesized to begin in the nephron.
- In vivo experiments are limited for studying early crystallization processes.
Purpose of the Study:
- To model urinary crystallization processes within different nephron regions.
- To determine the saturation index (SI) of stone-forming salts in the nephron.
- To investigate the impact of individual salt precipitation on stone formation.
Main Methods:
- Estimated urinary component concentrations and pH in nephron regions using blood concentrations and renal handling data.
- Utilized the JESS chemical speciation program to calculate SI values for calcium oxalate (CaOx), brushite (Bru), hydroxyapatite (HAP), and octacalcium phosphate (OCP).
- Simulated independent precipitation of stone-forming salts to assess effects on SI values of other salts.
Main Results:
- Hydroxyapatite (HAP) was supersaturated throughout the nephron.
- Other salts (CaOx, Bru, OCP) were supersaturated only in the distal collecting duct.
- HAP precipitation led to other salts becoming unsaturated, suggesting pure HAP stone formation.
- Precipitation of CaOx, Bru, or OCP suggested mixed CaOx/CaP stone formation, likely CaOx and Bru.
Conclusions:
- Urinary stone formation in the nephron is highly sensitive to chemical equilibria, pH, and component concentrations.
- The initial precipitating salt significantly influences the final stone composition (pure HAP vs. mixed CaOx/CaP).
- Theoretical modeling provides insights into complex in vivo crystallization pathways.
Related Concept Videos
Factors Affecting Solubility
Precipitation of Ions
The equation that describes the equilibrium between solid calcium carbonate and its solvated ions is:
Solubility Equilibria
The...
Precipitation Reactions
Qualitative Analysis
For instance, group IV...
Ionic Strength: Effects on Chemical Equilibria
In this solution, the primary cation—the calcium...

