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Navigating MARRVEL, a Web-Based Tool that Integrates Human Genomics and Model Organism Genetics Information
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Dalliance: interactive genome viewing on the web.

Thomas A Down1, Matias Piipari, Tim J P Hubbard

  • 1Wellcome Trust/CRUK Gurdon Institute, Cambridge CB2 1QN, UK. thomas@biodalliance.org

Bioinformatics (Oxford, England)
|January 22, 2011
PubMed
Summary
This summary is machine-generated.

Dalliance is an interactive genome viewer that runs in a web browser. It uses the Distributed Annotation System (DAS) protocol for easy data integration and customization.

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Area of Science:

  • Bioinformatics
  • Genomics
  • Web technologies

Background:

  • Genome browsers are essential tools for visualizing and analyzing genomic data.
  • Existing genome browsers may lack interactivity or require complex installations.

Purpose of the Study:

  • To introduce Dalliance, a novel, interactive genome viewer.
  • To highlight Dalliance's reliance on the Distributed Annotation System (DAS) for data retrieval.
  • To showcase the ease of customization and data integration offered by Dalliance.

Main Methods:

  • Dalliance is implemented as a JavaScript application running entirely within a web browser.
  • It leverages the existing Distributed Annotation System (DAS) protocol for data fetching.
  • The source code is available under the BSD license, facilitating custom installations.

Main Results:

  • Dalliance provides a highly interactive genome visualization experience.
  • Seamless integration of diverse genomic datasets is achieved through the DAS protocol.
  • Users can easily customize existing browsers or embed Dalliance into other web applications.

Conclusions:

  • Dalliance offers a flexible and user-friendly solution for genome browsing.
  • Its web-based nature and reliance on DAS promote accessibility and data sharing.
  • The open-source availability encourages widespread adoption and further development.