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Updated: Jun 5, 2026

Manipulation and Analysis of Cell Cycle-Dependent Processes in Budding Yeast
Published on: September 26, 2025
A new in vitro system for activating the cell cycle checkpoint
Jingna Wang1, Staci Engle, Youwei Zhang
1Department of Pharmacology, Case Western Reserve University, Cleveland, OH, USA.
Abstract:
In response to DNA damage, cells launch elegant networks of genome surveillance mechanisms, called cell cycle checkpoints, to detect and repair damaged DNA to maintain the genome stability. Key components of cell cycle checkpoints are two PI3K-related protein kinases (PIKK), ATR and ATM, which participate in both sensing the DNA damage and transducing the damage signal through phosphorylating two target protein kinases, Chk1 and Chk2, respectively. However, how exactly cell cycle checkpoints are activated, maintained, and terminated are not completely understood. Given the complexity of the cell cycle checkpoint signaling and the cellular environment, systems that can faithfully mimic the cell cycle checkpoint activation in vitro, such as the Xenopus egg extracts, are of extreme value in dissecting the precise molecular mechanisms underlying DNA damage response. Here we describe that the well-established in vitro transcription and translation (IVTNT) system has the capability to induce protein phosphorylation of substrates for ATR or ATM, including Chk1, Rad17, and ATM itself. These phosphorylation events highly mimic those occurring in cells when treated with DNA damaging agents. Our results demonstrate that the IVTNT system could be developed into a novel in vitro system to facilitating the dissecting of mechanisms leading to cell cycle checkpoint activation in vivo.
Insights
This study shows that the in vitro transcription and translation (IVTNT) system can mimic DNA damage responses, inducing crucial protein phosphorylation for cell cycle checkpoints. This system aids in understanding genome stability mechanisms.
Area of Science:
- Molecular Biology
- Cell Biology
- Biochemistry
Background:
- Cell cycle checkpoints are essential for genome stability, detecting and repairing DNA damage.
- Key regulators include PI3K-related protein kinases (PIKKs) like ATR and ATM, which phosphorylate Chk1 and Chk2.
- Complete understanding of checkpoint activation, maintenance, and termination remains elusive.
Purpose of the Study:
- To investigate the utility of the in vitro transcription and translation (IVTNT) system for studying cell cycle checkpoint activation.
- To determine if the IVTNT system can faithfully replicate in vivo DNA damage response signaling pathways.
Main Methods:
- Utilized the established in vitro transcription and translation (IVTNT) system.
- Analyzed protein phosphorylation of cell cycle checkpoint components, including Chk1, Rad17, and ATM.
Main Results:
- The IVTNT system successfully induced phosphorylation of ATR/ATM substrates like Chk1, Rad17, and ATM.
- These phosphorylation events closely resembled those observed in cells treated with DNA damaging agents.
- Demonstrated the capability of the IVTNT system to mimic key aspects of DNA damage response.
Conclusions:
- The IVTNT system is a valuable novel tool for dissecting cell cycle checkpoint activation mechanisms.
- This in vitro system facilitates the study of DNA damage response pathways in a controlled environment.
- Further research using IVTNT can elucidate the precise molecular mechanisms of cell cycle checkpoint activation in vivo.
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