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Updated: Jun 5, 2026

Study of the DNA Damage Checkpoint using Xenopus Egg Extracts
Published on: November 5, 2012
CtIP interacts with TopBP1 and Nbs1 in the response to double-stranded DNA breaks (DSBs) in Xenopus egg extracts
Juan S Ramírez-Lugo1, Hae Yong Yoo, Su Jin Yoon
1Division of Biology, California Institute of Technology, Pasadena, CA, USA.
Abstract:
In the presence of double-stranded DNA breaks (DSBs), the activation of ATR is achieved by the ability of ATM to phosphorylate TopBP1 on serine 1131, which leads to an enhancement of the interaction between ATR and TopBP1. In Xenopus egg extracts, the Mre11-Rad50-Nbs1 (MRN) complex is additionally required to bridge ATM and TopBP1 together. In this report, we show that CtIP, which is recruited to DSB-containing chromatin, interacts with both TopBP1 and Nbs1 in a damage-dependent manner. An N-terminal region containing the first two BRCT repeats of TopBP1 is essential for the interaction with CtIP. Furthermore, two distinct regions in the N-terminus of CtIP participate in establishing the association between CtIP and TopBP1. The first region includes two adjacent putative ATM/ATR phosphorylation sites on serines 273 and 275. Secondly, binding is diminished when an MRN-binding region spanning residues 25-48 is deleted, indicative of a role for the MRN complex in mediating this interaction. This was further evidenced by a decrease in the interaction between CtIP and TopBP1 in Nbs1-depleted extracts and a reciprocal decrease in the binding of Nbs1 to TopBP1 in the absence of CtIP, suggestive of the formation of a complex containing CtIP, TopBP1, and the MRN complex. When CtIP is immunodepleted from egg extracts, the activation of the response to DSBs is compromised and the levels of ATR, TopBP1, and Nbs1 on damaged chromatin are reduced. Thus, CtIP interacts with TopBP1 in a damage-stimulated, MRN-dependent manner during the activation of ATR in response to DSBs.
Insights
CtIP protein binds to TopBP1 and Nbs1 at DNA breaks, facilitating the ATR activation pathway. This interaction, dependent on the MRN complex, is crucial for the DNA damage response.
Area of Science:
- Molecular Biology
- Cellular Biology
- Biochemistry
Background:
- Double-stranded DNA breaks (DSBs) trigger cellular responses involving ATR activation.
- ATM-mediated phosphorylation of TopBP1 enhances ATR-TopBP1 interaction.
- The MRN complex bridges ATM and TopBP1 in Xenopus egg extracts.
Purpose of the Study:
- To investigate the role of CtIP in the DNA damage response pathway.
- To elucidate the interaction mechanisms between CtIP, TopBP1, Nbs1, and the MRN complex.
- To determine the functional significance of CtIP in ATR activation.
Main Methods:
- Immunodepletion assays in Xenopus egg extracts.
- Analysis of protein-protein interactions using chromatin recruitment studies.
- Site-directed mutagenesis to identify key interaction domains.
Main Results:
- CtIP interacts with TopBP1 and Nbs1 in a damage-dependent manner.
- CtIP binding to TopBP1 involves TopBP1's BRCT repeats and CtIP's N-terminal phosphorylation sites and MRN-binding region.
- The MRN complex mediates the CtIP-TopBP1 interaction.
- Depletion of CtIP compromises DSB response and reduces ATR, TopBP1, and Nbs1 recruitment to damaged chromatin.
Conclusions:
- CtIP acts as a scaffold, interacting with TopBP1 and Nbs1 in an MRN-dependent manner.
- CtIP is essential for efficient ATR activation and recruitment of key proteins to DSBs.
- This study reveals a novel CtIP-mediated mechanism in the DNA damage response pathway.
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