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Comprehensive Workflow for the Genome-wide Identification and Expression Meta-analysis of the ATL E3 Ubiquitin Ligase Gene Family in Grapevine
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Easyfig: a genome comparison visualizer.

Mitchell J Sullivan1, Nicola K Petty, Scott A Beatson

  • 1Australian Infectious Diseases Research Centre, School of Chemistry and Molecular Biosciences, University of Queensland, Brisbane, QLD 4072, Australia.

Bioinformatics (Oxford, England)
|February 1, 2011
PubMed
Summary
This summary is machine-generated.

Easyfig is a Python application that simplifies creating genomic comparison figures. It allows users to visualize and color BLAST comparisons for publication-quality results.

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Area of Science:

  • Genomics
  • Bioinformatics
  • Computational Biology

Background:

  • Easyfig is a freely available Python application.
  • It is compatible with Mac OS X, Unix, and Microsoft Windows.
  • The software can be downloaded from SourceForge.

Purpose of the Study:

  • To develop a user-friendly application for generating linear comparison figures of genomic loci.
  • To facilitate the visualization and analysis of BLAST comparisons between multiple genomic regions.
  • To streamline the process of preparing publication-quality figures from genomic data.

Main Methods:

  • Utilizes a graphical user interface (GUI) for ease of use.
  • Performs BLAST comparisons on genomic regions, from single genes to whole chromosomes.
  • Enables interactive coloring and visualization of comparison results.

Main Results:

  • Generates linear comparison figures of multiple genomic loci.
  • Visualizes and interactively colors BLAST comparisons.
  • Facilitates rapid transition from genomic data analysis to figure preparation.

Conclusions:

  • Easyfig provides an efficient tool for comparative genomics.
  • The application simplifies the creation of publication-ready figures.
  • It supports analysis ranging from single genes to entire prokaryotic genomes.