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Updated: Jun 4, 2026

Assessment of Submitochondrial Protein Localization in Budding Yeast Saccharomyces cerevisiae
Published on: July 19, 2021
Morphology and protein composition of the mitochondrial nucleoids in yeast cells lacking Abf2p, a high mobility group
Isamu Miyakawa1, Miwako Kanayama, Yuka Fujita
1Department of Biology, Faculty of Science, Yamaguchi University, Yamaguchi, Japan. miyakawa@yamaguchi-u.ac.jp
Abstract:
To elucidate the role of Abf2p, a major mitochondrial DNA-binding protein in the yeast Saccharomyces cerevisiae, we examined the morphology of the mitochondrial nucleoids (mt-nucleoids) in an ABF2-deficient mutant (Δabf2) in vivo and in vitro by 4',6-diamidino-2-phenylindole (DAPI) staining. The mt-nucleoids appeared as diffuse structures with irregular-size in Δabf2 cells that were grown to log phase in YPG medium containing glycerol, in contrast to the strings-of-beads appearance of mt-nucleoids in wild-type cells. In addition, DAPI-fluorescence intensity of the mt-nucleoids transmitted to the bud was significantly lower in Δabf2 cells than in wild-type cells at log phase. However, the lack of Abf2p did not affect the morphology or segregation of mitochondria. The protein composition of the mt-nucleoids isolated from Δabf2 cells grown to stationary phase in YPG medium was very similar to that of the mt-nucleoids isolated from wild-type cells cultured under the same conditions, except for the lack of Abf2p. These results together suggested that in log-phase cells, the lack of Abf2p influences not only the morphology of mt-nucleoids but also their transmission into the bud. On the other hand, our result suggested that in stationary-phase cells, the lack of Abf2p does not significantly alter the protein composition of the mt-nucleoids.
Insights
The major mitochondrial DNA-binding protein Abf2p (Abf2p) is crucial for yeast mitochondrial nucleoid (mt-nucleoid) morphology and transmission to daughter cells during log phase. Its absence impacts mt-nucleoid structure but not overall mitochondrial health.
Area of Science:
- Mitochondrial biology
- Yeast genetics
- Molecular cell biology
Background:
- Abf2p is a key protein involved in mitochondrial DNA binding in Saccharomyces cerevisiae.
- Mitochondrial nucleoids (mt-nucleoids) are essential structures housing the mitochondrial genome.
- Understanding Abf2p's function is vital for comprehending mt-nucleoid organization and inheritance.
Purpose of the Study:
- To investigate the role of Abf2p in yeast mt-nucleoid morphology and function.
- To analyze the impact of Abf2p deficiency on mt-nucleoid structure and segregation.
- To compare mt-nucleoid protein composition in wild-type and Abf2p-deficient yeast cells.
Main Methods:
- Utilized 4',6-diamidino-2-phenylindole (DAPI) staining for in vivo and in vitro visualization of mt-nucleoids.
- Examined mt-nucleoid morphology in Abf2p-deficient (Δabf2) and wild-type yeast cells.
- Assessed DAPI-fluorescence intensity and mitochondrial segregation in log-phase and stationary-phase cells.
Main Results:
- Δabf2 cells exhibited diffuse, irregularly sized mt-nucleoids compared to wild-type cells' string-of-beads structure during log phase.
- Reduced DAPI-fluorescence transmission to buds was observed in Δabf2 cells.
- Mitochondrial morphology and segregation remained unaffected by Abf2p deficiency.
- mt-nucleoid protein composition was similar between Δabf2 and wild-type cells in stationary phase, barring Abf2p.
Conclusions:
- Abf2p significantly influences mt-nucleoid morphology and transmission to daughter cells during log phase in yeast.
- The absence of Abf2p does not impair overall mitochondrial structure or segregation.
- In stationary-phase cells, Abf2p deficiency has a minimal impact on the protein composition of mt-nucleoids.
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