Related Experiment Video
Updated: Jun 4, 2026

Using a Bacterial Pathogen to Probe for Cellular and Organismic-level Host Responses
Published on: February 22, 2019
A systems biology approach to infectious disease research: innovating the pathogen-host research paradigm
Alan Aderem1, Joshua N Adkins, Charles Ansong
1Institute for Systems Biology, Seattle, Washington, USA.
Abstract:
The twentieth century was marked by extraordinary advances in our understanding of microbes and infectious disease, but pandemics remain, food and waterborne illnesses are frequent, multidrug-resistant microbes are on the rise, and the needed drugs and vaccines have not been developed. The scientific approaches of the past-including the intense focus on individual genes and proteins typical of molecular biology-have not been sufficient to address these challenges. The first decade of the twenty-first century has seen remarkable innovations in technology and computational methods. These new tools provide nearly comprehensive views of complex biological systems and can provide a correspondingly deeper understanding of pathogen-host interactions. To take full advantage of these innovations, the National Institute of Allergy and Infectious Diseases recently initiated the Systems Biology Program for Infectious Disease Research. As participants of the Systems Biology Program, we think that the time is at hand to redefine the pathogen-host research paradigm.
Insights
Traditional molecular biology approaches are insufficient for combating infectious diseases. A new systems biology research paradigm is needed to understand complex pathogen-host interactions and develop novel drugs and vaccines.
Area of Science:
- Microbiology
- Infectious Diseases
- Systems Biology
- Genomics
- Proteomics
Background:
- Despite advances, infectious diseases like pandemics and foodborne illnesses persist.
- The rise of multidrug-resistant microbes poses a significant global health threat.
- Existing drugs and vaccines are insufficient to combat emerging and re-emerging infectious diseases.
Purpose of the Study:
- To address the limitations of traditional molecular biology in infectious disease research.
- To leverage technological and computational innovations for a deeper understanding of pathogen-host interactions.
- To propose a redefined research paradigm integrating systems biology approaches for infectious disease research.
Main Methods:
- Utilizing advanced technologies for comprehensive biological system views.
- Employing computational methods to analyze complex biological data.
- Integrating insights from genomics and proteomics to study pathogen-host dynamics.
Main Results:
- New technological and computational tools offer unprecedented views of biological systems.
- These tools facilitate a deeper understanding of pathogen-host interactions.
- The National Institute of Allergy and Infectious Diseases has initiated a Systems Biology Program for Infectious Disease Research.
Conclusions:
- The current scientific approaches are inadequate for addressing modern infectious disease challenges.
- A shift towards a systems biology approach is crucial for advancing infectious disease research.
- Redefining the pathogen-host research paradigm is essential for developing effective countermeasures against infectious diseases.
Related Concept Videos
Determinants of Bacterial Pathogenicity and Virulence
Colonisation of Pathogens
Infection
The chain begins with pathogens: bacteria, viruses, fungi, prions, or parasites such as protozoa helminths. These can be present on the skin as transient or resident flora, or they can be acquired from the environment. Identifying and treating the type of infection and...
Principles of Disease Surveillance
Investigation of Disease Outbreaks
Infectious Diseases and Their Occurrence

