Related Experiment Video
Updated: Jun 4, 2026
11:19
Isolation of Translating Ribosomes Containing Peptidyl-tRNAs for Functional and Structural Analyses
Published on: February 25, 2011
Peptides in the ribosomal tunnel talk back
1Gene Center and Department for Biochemistry, Center for Protein Science-Munich (CiPS-M), University of Munich, Feodor-Lynen-Strasse 25, D-81377 Munich, Germany. wilson@lmb.uni-muenchen.de
Molecular Cell
|February 5, 2011
Summary
Nascent peptides emerging from the ribosome can stall protein synthesis. This occurs by limiting the types of aminoacyl-tRNAs that can access the peptidyl transferase center, a key step in translation.
Area of Science:
- Molecular biology
- Protein synthesis
- Ribosome function
Background:
- The ribosome is a complex molecular machine responsible for protein synthesis.
- Translation involves the sequential addition of amino acids to a growing polypeptide chain, guided by messenger RNA.
- The peptidyl transferase center (PTC) is the catalytic core of the ribosome where peptide bonds are formed.
Discussion:
- This study reveals a novel mechanism of translational regulation.
- Nascent peptides, while still within the ribosomal tunnel, can directly interact with the PTC.
- This interaction leads to translational stalling, suggesting a feedback loop in protein synthesis.
Key Insights:
- Nascent peptides can influence the ribosome's own catalytic activity.
- The physical presence of the peptide within the tunnel restricts the binding of specific aminoacyl-tRNAs to the PTC.
- This peptide-mediated stalling provides a new layer of control over protein production.
Outlook:
- Further research can explore the specific sequences or structures of nascent peptides that trigger stalling.
- Understanding this mechanism could lead to new therapeutic strategies targeting protein synthesis.
- Investigating the role of this stalling in different cellular contexts and diseases is warranted.
Related Concept Videos
01:44Termination of Translation
The large ribosomal subunit has several important structures essential to translation. These include the peptidyl transferase center (PTC) - which is the site where the peptide bond is formed - and a large, internal, water-filled tube through which the nascent polypeptide moves. This latter structure is called the Peptide Exit Tunnel, and it begins at the PTC and spans the body of the large ribosomal subunit. During translation, as the nascent polypeptide chain is synthesized, it passes through...
01:20Cotranslational Protein Translocation
Translocation of proteins across membranes is an ancient process that occurs even in bacteria and archaebacteria. In fact, the components of the translocation machinery are still conserved between prokaryotes and eukaryotes.
Sec61 channel partners for cotranslational translocation
During cotranslational translocation, the Sec61 channel partners with the signal recognition particle (SRP), the signal recognition particle receptor (SR), and the ribosomes to transport the nascent polypeptide chain...
Sec61 channel partners for cotranslational translocation
During cotranslational translocation, the Sec61 channel partners with the signal recognition particle (SRP), the signal recognition particle receptor (SR), and the ribosomes to transport the nascent polypeptide chain...
01:34Directing Proteins to the Rough Endoplasmic Reticulum
The organelle-specific signaling sequences direct proteins synthesized in the cytosol to their final destination like ER, mitochondria, peroxisomes, etc. Some of the proteins directed to ER are then trafficked via vesicles to other organelles within the cell or the extracellular environment through the Golgi complex. For example, the rough ER synthesizes soluble proteins for transportation to the lysosomes or secretion out of the cell. It can also synthesize transmembrane proteins that can...
01:27Post-translational Translocation of Proteins to the RER
A sizable fraction of proteins destined for ER are first synthesized in the cell cytosol and then transported across the ER membrane–a process called post-translational translocation. Similar to cotranslationally translocated proteins, these proteins also use the Sec translocon complex to enter the ER lumen.
Targeting proteins to the ER
Hsp40 and Hsp70 chaperone molecules bind the translated proteins in the cytosol to prevent their folding. The chaperone binding helps to keep the signal...
Targeting proteins to the ER
Hsp40 and Hsp70 chaperone molecules bind the translated proteins in the cytosol to prevent their folding. The chaperone binding helps to keep the signal...
01:19Translocation of Proteins into the Mitochondria
Mitochondrial precursors are translocated to the internal subcompartments via independent mechanisms involving distinct protein machineries called translocases.
Sorting of outer membrane proteins:
Mitochondrial outer membrane proteins are of two types: the transmembrane, beta-barrel porins, and the membrane-anchored, alpha-helical proteins. Beta-barrel porin precursors are translocated by the TOM complex and inserted into the outer mitochondrial membrane by the SAM complex. In contrast,...
Sorting of outer membrane proteins:
Mitochondrial outer membrane proteins are of two types: the transmembrane, beta-barrel porins, and the membrane-anchored, alpha-helical proteins. Beta-barrel porin precursors are translocated by the TOM complex and inserted into the outer mitochondrial membrane by the SAM complex. In contrast,...
01:27Ribosomes
Ribosomes translate genetic information encoded by messenger RNA (mRNA) into proteins. Both prokaryotic and eukaryotic cells have ribosomes. Cells that synthesize large quantities of protein—such as secretory cells in the human pancreas—can contain millions of ribosomes.
Ribosome Structure and Assembly
Ribosomes are composed of ribosomal RNA (rRNA) and proteins. In eukaryotes, rRNA is transcribed from genes in the nucleolus—a part of the nucleus that specializes in ribosome production. Within...
Ribosome Structure and Assembly
Ribosomes are composed of ribosomal RNA (rRNA) and proteins. In eukaryotes, rRNA is transcribed from genes in the nucleolus—a part of the nucleus that specializes in ribosome production. Within...