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Updated: Jun 4, 2026

A Reporter Assay to Analyze Intronic microRNA Maturation in Mammalian Cells
Published on: June 16, 2022
Competition for XPO5 binding between Dicer mRNA, pre-miRNA and viral RNA regulates human Dicer levels
Yamina Bennasser1, Christine Chable-Bessia, Robinson Triboulet
1Centre National de la Recherche Scientifique, Institut de Génétique Humaine UPR1142, Montpellier, France.
Abstract:
MicroRNAs (miRNAs) are a class of small, noncoding RNAs that function by regulating gene expression post-transcriptionally. Alterations in miRNA expression can strongly influence cellular physiology. Here we demonstrated cross-regulation between two components of the RNA interference (RNAi) machinery in human cells. Inhibition of exportin-5, the karyopherin responsible for pre-miRNA export, downregulated expression of Dicer, the RNase III required for pre-miRNA maturation. This effect was post-transcriptional and resulted from an increased nuclear localization of Dicer mRNA. In vitro assays and cellular RNA immunoprecipitation experiments showed that exportin-5 interacted directly with Dicer mRNA. Titration of exportin-5 by overexpression of either pre-miRNA or the adenoviral VA1 RNA resulted in loss of Dicer mRNA-exportin-5 interaction and reduction of Dicer level. This saturation also occurred during adenoviral infection and enhanced viral replication. Our study reveals an important cross-regulatory mechanism between pre-miRNA or viral small RNAs and Dicer through exportin-5.
Insights
Exportin-5 inhibition downregulates Dicer, a key enzyme for microRNA (miRNA) maturation. This cross-regulation impacts cellular physiology and viral replication by affecting Dicer mRNA nuclear export.
Area of Science:
- Molecular Biology
- Gene Regulation
- RNA Interference
Background:
- MicroRNAs (miRNAs) are crucial regulators of gene expression.
- The RNA interference (RNAi) pathway involves multiple protein and RNA components.
- Exportin-5 mediates the nuclear export of pre-miRNAs, essential for miRNA biogenesis.
Purpose of the Study:
- To investigate the cross-regulatory relationship between exportin-5 and Dicer within the RNAi machinery.
- To elucidate the molecular mechanism underlying the interaction between exportin-5 and Dicer mRNA.
Main Methods:
- Inhibition of exportin-5 in human cells.
- Analysis of Dicer mRNA and protein levels.
- In vitro binding assays and cellular RNA immunoprecipitation (RIP) to assess RNA-protein interactions.
- Overexpression studies to titrate exportin-5 levels.
- Adenoviral infection models.
Main Results:
- Exportin-5 inhibition led to decreased Dicer expression via post-transcriptional mechanisms.
- Dicer mRNA exhibited increased nuclear localization upon exportin-5 inhibition.
- Exportin-5 was shown to directly bind to Dicer mRNA.
- Overexpression of pre-miRNA or viral RNA saturated exportin-5, disrupting its interaction with Dicer mRNA and reducing Dicer levels.
- Adenoviral infection mimicked this saturation, enhancing viral replication.
Conclusions:
- A novel cross-regulatory mechanism exists between pre-miRNAs/viral RNAs and Dicer mediated by exportin-5.
- Exportin-5 plays a critical role in regulating Dicer expression by controlling Dicer mRNA nuclear export.
- This interaction is crucial for maintaining cellular homeostasis and can be exploited by viruses for replication.
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Regulation of Expression at Multiple Steps

