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High-resolution Structural Magnetic Resonance Imaging of the Human Subcortex In Vivo and Postmortem
Published on: December 30, 2015
MRI artifacts in human brain tissue after prolonged formalin storage
Sara van Duijn1, Rob J A Nabuurs, Sanneke van Rooden
1Department of Pathology, Leiden University Medical Center, Leiden, The Netherlands. S.van_duijn@lumc.nl
Abstract:
For the interpretation of magnetic resonance imaging (MRI) abnormalities in brain pathology, often ex vivo tissue is used. The purpose of this study was to determine the pathological substrate of several distinct forms of MR hypointensities that were found in formalin-fixed brain tissue with amyloid-beta deposits. Samples of brain cortex were scanned using effective transverse relaxation time-weighted protocols at several resolutions on a 9.4 T MRI scanner. High resolution MRI showed large coarse hypointensities throughout the cortical gray and white matter, corresponding to macroscopic discolorations and microscopic circumscribed areas of granular basophilic neuropil changes, without any further specific tissue reactions or amyloid-beta related pathology. These coarse MRI hypointensities were identified as localized areas of absent neuropil replaced by membrane/myelin sheath remnants using electron microscopy. Interestingly, the presence/absence of these tissue alterations was not related to amyloid deposits, but strongly correlated to the fixation time of the samples in unrefreshed formalin. These findings show that prolonged storaged of formalin fixed brain tissue results in subtle histology artifacts, which show on MRI as hypointensities that on first appearance are indistinguishable from genuine brain pathology. This indicates that postmortem MRI should be interpreted with caution, especially if the history of tissue preservation is not fully known.
Insights
Formalin fixation artifacts in brain tissue can mimic pathology on magnetic resonance imaging (MRI). Prolonged formalin storage causes MRI hypointensities, requiring cautious interpretation of postmortem scans.
Area of Science:
- Neuroimaging
- Neuropathology
- Histology
Background:
- Magnetic resonance imaging (MRI) is crucial for diagnosing brain pathology.
- Ex vivo formalin-fixed brain tissue is often used for MRI interpretation.
- Distinct MR hypointensities in fixed tissue require pathological correlation.
Purpose of the Study:
- To identify the pathological basis of MR hypointensities in formalin-fixed brain tissue.
- To investigate the relationship between hypointensities, amyloid-beta deposits, and tissue fixation.
Main Methods:
- High-resolution 9.4 T MRI scanning of formalin-fixed human brain cortex.
- Effective transverse relaxation time-weighted imaging protocols.
- Electron microscopy for ultrastructural analysis of tissue alterations.
Main Results:
- MRI hypointensities corresponded to areas of absent neuropil, replaced by membrane/myelin sheath remnants.
- These alterations were not linked to amyloid-beta deposits.
- Hypointensities strongly correlated with prolonged formalin fixation time, indicating artifact.
Conclusions:
- Prolonged formalin fixation of brain tissue induces subtle histological artifacts.
- These artifacts manifest as MRI hypointensities, mimicking genuine neuropathology.
- Postmortem MRI interpretation necessitates careful consideration of tissue preservation history.

