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Updated: Jun 4, 2026

Manipulation and Analysis of Cell Cycle-Dependent Processes in Budding Yeast
Published on: September 26, 2025
Cooperation between dE2F1 and Yki/Sd defines a distinct transcriptional program necessary to bypass cell cycle exit
Brandon N Nicolay1, Battuya Bayarmagnai, Abul B M M K Islam
1Department of Biochemistry and Molecular Genetics, University of Illinois at Chicago, Chicago, Illinois 60607, USA.
Abstract:
The Hippo signaling pathway regulates organ size homeostasis, while its inactivation leads to severe hyperplasia in flies and mammals. The transcriptional coactivator Yorkie (Yki) mediates transcriptional output of the Hippo signaling. Yki lacks a DNA-binding domain and is recruited to its target promoters as a complex with DNA-binding proteins such as Scalloped (Sd). In spite of recent progress, an open question in the field is the mechanism through which the Yki/Sd transcriptional signature is defined. Here, we report that Yki/Sd synergizes with and requires the transcription factor dE2F1 to induce a specific transcriptional program necessary to bypass the cell cycle exit. We show that Yki/Sd and dE2F1 bind directly to the promoters of the Yki/Sd-dE2F1 shared target genes and activate their expression in a strong cooperative manner. Consistently, RBF, a negative regulator of dE2F1, negates this synergy and limits the overall level of expression of the Yki/Sd-dE2F1 target genes. Significantly, dE2F1 is needed for Yki/Sd-dependent full activation of these target genes, and a de2f1 mutation strongly blocks yki-induced proliferation in vivo. Thus, the Yki transcriptional program is determined through functional interactions with other transcription factors directly at target promoters. We suggest that such functional interactions would influence Yki activity and help diversify the transcriptional output of the Hippo pathway.
Insights
The Hippo pathway
Area of Science:
- Cellular biology
- Molecular biology
- Developmental biology
Background:
- The Hippo signaling pathway is crucial for maintaining organ size homeostasis.
- Yorkie (Yki) is a transcriptional coactivator mediating the Hippo pathway's output.
- Yki functions with DNA-binding proteins like Scalloped (Sd) to regulate gene expression.
Purpose of the Study:
- To elucidate the mechanism defining the Yki/Sd transcriptional signature.
- To investigate the role of transcription factors in Yki/Sd-mediated gene regulation.
- To understand how Yki/Sd bypasses cell cycle exit.
Main Methods:
- Investigated the synergistic interaction between Yki/Sd and dE2F1.
- Utilized chromatin immunoprecipitation to assess direct promoter binding.
- Employed genetic mutations (e.g., de2f1) to study in vivo effects on proliferation.
Main Results:
- Yki/Sd synergizes with and requires dE2F1 to activate a specific transcriptional program.
- Yki/Sd and dE2F1 directly bind to shared target gene promoters, cooperatively activating expression.
- dE2F1 is essential for Yki/Sd-dependent gene activation and Yki-induced proliferation.
Conclusions:
- The Yki transcriptional program is determined by functional interactions with transcription factors like dE2F1 at target promoters.
- These interactions diversify the transcriptional output of the Hippo pathway.
- dE2F1 is a key partner in mediating Yki/Sd's role in cell cycle regulation and proliferation.
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