Proinflammatory fecal mRNA and childhood bacterial enteric infections

William E Bennett1, Rosbel González-Rivera, Bao N Puente

  • 1Washington University School of Medicine; Department of Pediatrics; Division of Pediatric Gastroenterology and Nutrition; St. Louis, MO USA.

Gut Microbes
|February 18, 2011
PubMed

Insights

Measuring specific messenger RNA (mRNA) in stool can noninvasively assess gastrointestinal inflammation. Infected children showed higher levels of certain inflammatory markers like IL-8 mRNA compared to controls.

Area of Science:

  • Gastroenterology
  • Molecular Biology
  • Infectious Disease

Background:

  • Assessment of specific mRNAs in human samples is useful in characterizing disease.
  • mRNA in human stool has been understudied.
  • Gastrointestinal inflammation is a key factor in various diseases.

Purpose of the Study:

  • To investigate the utility of quantifying specific mRNAs in human stool for assessing gastrointestinal inflammation.
  • To compare mRNA levels of inflammatory markers between infected children and healthy controls.

Main Methods:

  • Fecal RNA was purified from 46 infected children (Campylobacter jejuni, E. coli O157:H7, Salmonella spp., Shigella sonnei) and 26 controls.
  • Quantitative reverse transcription polymerase chain reaction (qRT-PCR) was used to compare mRNA proportions of IL-1β, IL-8, osteoprotegerin, and calprotectin.
  • Enzyme immunoassays (EIA) were used to determine protein concentrations of calprotectin, IL-8, and osteoprotegerin.

Main Results:

  • Infected stools showed increased transcripts of IL-1β, IL-8, and calprotectin compared to controls.
  • mRNA and protein concentrations correlated for IL-8.
  • Correlation was not observed between mRNA and protein concentrations for calprotectin.

Conclusions:

  • Stool mRNA quantification is a potentially useful, noninvasive method for assessing gastrointestinal inflammation.
  • This method may offer greater sensitivity than enzyme immunoassays for detecting inflammation.

Related Concept Videos

Regulated mRNA Transport02:22

Regulated mRNA Transport

In eukaryotes, transcription and translation are compartmentalized; an mRNA is first synthesized in the nucleus and then selectively transported to the cytoplasm for protein synthesis. Before transport, a pre-mRNA undergoes several steps of post-transcriptional modifications including splicing, 5' capping, and the addition of a poly-adenine tail. Various proteins bind to the pre-mRNA during these modifications. The mRNA transport takes place with the help of multiple proteins playing...
7.0K
pre-mRNA Processing02:01

pre-mRNA Processing

In eukaryotic cells, transcripts made by RNA polymerase are modified and processed before exiting the nucleus. Unprocessed RNA is called precursor mRNA or pre-mRNA to distinguish it from mature mRNA.
Once about 20-40 ribonucleotides have been joined together by RNA polymerase, a group of enzymes adds a “cap” to the 5’ end of the growing transcript. In this process, a 5’ phosphate is replaced by modified guanosine that has a methyl group attached to it (7-Methyl...
57.6K
Nuclear Export of mRNA02:31

Nuclear Export of mRNA

Before mRNAs are exported to the cytoplasm, it is crucial to check each mRNA for structural and functional integrity. Eukaryotic cells use several different mechanisms, collectively known as mRNA surveillance, to look for irregularities in mRNAs. Irregular or aberrant mRNA are rapidly degraded by various enzymes. If a defective mRNA escapes the surveillance, it would be translated into a protein which would either be non-functional or not function properly. One of the primary irregularities in...
8.8K
mRNA Stability and Gene Expression02:51

mRNA Stability and Gene Expression

The structure and stability of mRNA molecules regulates gene expression, as mRNAs are a key step in the pathway from gene to protein. In eukaryotes, the half-life of mRNA varies from a few minutes up to several days. mRNA stability is essential in growth and development. The absence of the proteins regulating its stability, such as tristetraprolin in mice, can cause systemic issues, including bone marrow overgrowth, inflammation, and autoimmunity.
Cis-acting Elements involved in mRNA stability
6.7K
Nonsense-mediated mRNA Decay02:27

Nonsense-mediated mRNA Decay

The Upf proteins that carry out nonsense-mediated decay (NMD) are found in all eukaryotic organisms, including humans. Each protein has an individual role, but they need to work in collaboration. Upf1 is an ATP-dependent RNA helicase that unwinds the RNA helix. Because Upf1 can unwind any RNA, Upf2 and Upf3 are required to help Upf1 discriminate between nonsense and normal mRNAs.
Usually, Upf3 binds to an Exon Junction Complex (EJC) at mRNA splice sites. If a ribosome fully translates the mRNA,...
11.9K
Bacterial RNA Polymerase00:43

Bacterial RNA Polymerase

Unlike eukaryotes, bacteria use a single RNA Polymerase (RNAP) to transcribe all genes. The different subunits of bacterial RNAPhave distinct functions. The multisubunit structure of the bacterial RNAP helps the enzyme to maintain catalytic function, facilitate assembly, interact with DNA and RNA, and self-regulate its activity.
In most genes, the transcription site is a single base present upstream of the coding sequence. Though RNAP is a catalytically efficient enzyme, it does not recognize...
32.8K