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Nonlinear mapping technique for data visualization and clustering assessment of LIBS data: application to ChemCam
J Lasue1, R C Wiens, T F Stepinski
1International Space and Response Division, Los Alamos National Laboratory, Los Alamos, NM 87544, USA. lasue@lanl.gov
Analytical and Bioanalytical Chemistry
|February 19, 2011
Summary
The nonlinear Sammon's map projection effectively visualizes ChemCam laser-induced breakdown spectroscopy (LIBS) data from Mars. This method offers superior 2D data representation and clustering purity compared to linear techniques like PCA and ICA.
Area of Science:
- Planetary Science
- Analytical Chemistry
- Data Science
Background:
- ChemCam, a laser-induced breakdown spectroscopy (LIBS) instrument, will analyze Martian geology.
- LIBS is vital for identifying samples and quantifying elemental abundances remotely.
- Effective data visualization and clustering are essential for interpreting LIBS data.
Purpose of the Study:
- To compare linear and nonlinear multivariate techniques for visualizing ChemCam LIBS data.
- To assess the effectiveness of Principal Component Analysis (PCA), Independent Component Analysis (ICA), and Sammon's map projection for 2D data representation.
- To determine the optimal technique for combining data visualization and clustering assessment.
Main Methods:
- Utilized Principal Component Analysis (PCA) and Independent Component Analysis (ICA) as linear methods.
- Applied Sammon's map projection as a nonlinear technique.
- Evaluated 2D data representation using optimization values and clustering purity via entropy.
Main Results:
- Sammon's map projection provided the best 2D representation (2.8%-4.3% optimization) and clustering purity (entropy 0.81).
- Linear methods (ICA, PCA) showed significantly higher 'stress' and lower clustering purity.
- Sammon's map was faster when initialized with ICA projections.
Conclusions:
- Nonlinear Sammon's map projection is the superior technique for 2D visualization and clustering of ChemCam LIBS data.
- This method enhances the interpretation of elemental abundance data from Mars.
- Higher dimensional projections (PCA, ICA) may improve results but reduce intuitive 2D interpretability.
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