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Updated: Jun 4, 2026

Identifying Protein-protein Interaction Sites Using Peptide Arrays
Published on: November 18, 2014
The Epstein-Barr Virus BART microRNAs target the pro-apoptotic protein Bim
Aron R Marquitz1, Anuja Mathur, Cyd Stacy Nam
1Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA. arm6@med.unc.edu
Abstract:
In Epstein-Barr Virus infected epithelial cancers, the alternatively spliced BamHI A rightward transcripts (BARTs) are abundantly expressed and are the template for two large clusters of miRNAs. This study indicates that both of these clusters independently can inhibit apoptosis in response to etoposide in an epithelial cell line. The Bcl-2 interacting mediator of cell death (Bim) was identified using gene expression microarrays and bioinformatic analysis indicated multiple potential binding sites for several BART miRNAs in the Bim 3'UTR. Bim protein was reduced by Cluster I and the individual expression of several miRNAs, while mRNA levels were unaffected. In reporter assays, the Bim 3' untranslated region (UTR) was inhibited by both clusters but not by any individual miRNAs. These results are consistent with the BART miRNAs downregulating Bim post-transcriptionally in part through the 3'UTR and suggest that there are miRNA recognition sites within other areas of the Bim mRNA.
Insights
Epstein-Barr Virus (EBV) BART miRNAs inhibit apoptosis by downregulating Bim protein post-transcriptionally. These microRNAs target Bim mRNA, reducing its protein levels without affecting mRNA quantity in epithelial cancer cells.
Area of Science:
- Molecular Biology
- Virology
- Cancer Research
Background:
- Epstein-Barr Virus (EBV) is associated with epithelial cancers.
- Alternatively spliced BamHI A rightward transcripts (BARTs) are highly expressed in EBV-infected cells.
- BARTs serve as precursors for microRNA (miRNA) clusters that regulate cellular processes.
Purpose of the Study:
- To investigate the role of BART miRNA clusters in regulating apoptosis in epithelial cancer cells.
- To identify the molecular targets of BART miRNAs involved in apoptosis.
- To elucidate the mechanism of BART miRNA-mediated gene regulation.
Main Methods:
- Gene expression microarrays to identify potential targets.
- Bioinformatic analysis to predict miRNA binding sites.
- Reporter assays to validate miRNA-target interactions.
- Western blotting to assess protein level changes.
Main Results:
- Both BART miRNA clusters independently inhibited etoposide-induced apoptosis.
- The Bcl-2 interacting mediator of cell death (Bim) was identified as a target.
- BART miRNAs reduced Bim protein levels, but not mRNA levels, suggesting post-transcriptional regulation.
- The Bim 3' untranslated region (UTR) was implicated in miRNA-mediated repression.
Conclusions:
- BART miRNAs play a significant role in inhibiting apoptosis in EBV-infected epithelial cancers.
- BART miRNAs downregulate Bim protein expression post-transcriptionally, partly via the 3'UTR.
- Additional regulatory sites within the Bim mRNA may exist for BART miRNA recognition.
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