Related Experiment Video
Updated: Jun 4, 2026

Probing C84-embedded Si Substrate Using Scanning Probe Microscopy and Molecular Dynamics
Published on: September 28, 2016
An atomistic simulation for 4-cyano-4'-pentylbiphenyl and its homologue with a reoptimized force field
Jianguo Zhang1, Jiaye Su, Hongxia Guo
1Beijing National Laboratory for Molecular Sciences, State Key Laboratory of Polymer Physics and Chemistry, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China.
Abstract:
Liquid crystals playing a crucial role in material sciences show increasing potential applications in nanotechnology and industry. Generally, thermodynamic and dynamic properties of liquid crystals strongly depend on the corresponding force fields (FF); thus, it is necessary and urgent for us to establish a reliable force field for a given liquid crystal system. In this paper, we develop a new set of FF parameters for the 5CB (4-cyano-4'-pentylbiphenyl) molecule by reoptimizing some parameters of TraPPE-UA in order to reproduce the bulk density. This strategy for the construction of 5CB FF is rather advisable as it not only provides reliable values for the Lennard-Jones parameters but also reduces the computational cost and maintains FF transferability. Indeed, our simulation results show that the phase behavior, the order parameter, conformational features, neighboring molecular pair arrangements, and diffusion properties of 5CB can be reproduced very well. We further validate the transferability of this 5CB FF by extending it to the 8CB (4-cyano-4'-octylbiphenyl) system. As a result, both the nematic and the partial bilayer smectic phases (Sm-A(d)) and the nematic-isotropic and the smectic-nematic transition temperatures as well as the diffusion properties of 8CB are successfully reproduced. Therefore, this set of FF parameters originally designed for the 5CB molecule is reliable and transferable. Its effectiveness to model nCB series and molecules with similar chemical structures is expected.
More Related Videos
08:54Vibrational Spectra of a N719-Chromophore/Titania Interface from Empirical-Potential Molecular-Dynamics Simulation, Solvated by a Room Temperature Ionic Liquid
Published on: January 25, 2020
05:47In Silico Modeling Method for Computational Aquatic Toxicology of Endocrine Disruptors: A Software-Based Approach Using QSAR Toolbox
Published on: August 28, 2019
Related Concept Videos
π Molecular Orbitals of 1,3-Butadiene
The simplest conjugated diene is 1,3-butadiene: a four-carbon system where each carbon is sp2-hybridized and has an unhybridized p orbital that contains an unpaired electron. According to molecular orbital theory, atomic orbitals combine to form molecular orbitals such that the number...
Aromatic Hydrocarbon Cations: Structural Overview
Removing one hydrogen from the intervening CH2 group with both...
Aromatic Hydrocarbon Anions: Structural Overview
Due to the absence of continuous overlap of p...
Structure of Benzene: Molecular Orbital Model
Conformations of Cyclohexane
The chair form is the most stable and derives its name from its resemblance to the “easy chair.” In the chair conformation, two carbon atoms are arranged out-of-plane — one above and one below, minimizing the torsional strain. In the chair form, the bond angle is very close to the ideal tetrahedral value,...
Hybridization of Atomic Orbitals I