Related Experiment Video
Updated: Jun 4, 2026

Quantifying Yersinia pseudotuberculosis Type III Secretion System Activity Following Iron Starvation and Anaerobic Growth
Published on: May 31, 2024
Phenotypic and transcriptional analysis of the osmotic regulator OmpR in Yersinia pestis
He Gao1, Yiquan Zhang, Yanping Han
1State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing 100071, PR China.
Background:
The osmotic regulator OmpR in Escherichia coli regulates differentially the expression of major porin proteins OmpF and OmpC. In Yersinia enterocolitica and Y. pseudotuberculosis, OmpR is required for both virulence and survival within macrophages. However, the phenotypic and regulatory roles of OmpR in Y. pestis are not yet fully understood.
Results:
Y. pestis OmpR is involved in building resistance against phagocytosis and controls the adaptation to various stressful conditions met in macrophages. The ompR mutation likely did not affect the virulence of Y. pestis strain 201 that was a human-avirulent enzootic strain. The microarray-based comparative transcriptome analysis disclosed a set of 224 genes whose expressions were affected by the ompR mutation, indicating the global regulatory role of OmpR in Y. pestis. Real-time RT-PCR or lacZ fusion reporter assay further validated 16 OmpR-dependent genes, for which OmpR consensus-like sequences were found within their upstream DNA regions. ompC, F, X, and R were up-regulated dramatically with the increase of medium osmolarity, which was mediated by OmpR occupying the target promoter regions in a tandem manner.
Conclusion:
OmpR contributes to the resistance against phagocytosis or survival within macrophages, which is conserved in the pathogenic yersiniae. Y. pestis OmpR regulates ompC, F, X, and R directly through OmpR-promoter DNA association. There is an inducible expressions of the pore-forming proteins OmpF, C, and × at high osmolarity in Y. pestis, in contrast to the reciprocal regulation of them in E. coli. The main difference is that ompF expression is not repressed at high osmolarity in Y. pestis, which is likely due to the absence of a promoter-distal OmpR-binding site for ompF.
Insights
The OmpR regulator in Yersinia pestis enhances resistance to phagocytosis and macrophage survival. It directly controls the expression of key porin genes, unlike in E. coli.
Area of Science:
- Microbiology
- Molecular Biology
- Genetics
Background:
- OmpR regulates porin expression in E. coli.
- OmpR is crucial for virulence and macrophage survival in Yersinia species.
- The role of OmpR in Yersinia pestis is not fully understood.
Purpose of the Study:
- Investigate the phenotypic and regulatory roles of OmpR in Yersinia pestis.
- Determine the genes regulated by OmpR in Y. pestis.
- Understand the mechanism of OmpR-mediated gene regulation.
Main Methods:
- Microarray-based comparative transcriptome analysis.
- Real-time RT-PCR.
- lacZ fusion reporter assay.
Main Results:
- OmpR is essential for resistance to phagocytosis and adaptation to stress within macrophages.
- A mutation in ompR affected the expression of 224 genes, indicating a global regulatory role.
- OmpR directly regulates ompC, ompF, ompX, and ompR genes by binding to their promoter regions.
- Expression of ompC, F, X, and R is induced by high osmolarity in a manner mediated by OmpR.
Conclusions:
- OmpR's role in phagocytosis resistance and macrophage survival is conserved across pathogenic yersiniae.
- Y. pestis OmpR directly regulates specific porin genes (ompC, F, X, R).
- Unlike E. coli, Y. pestis exhibits inducible expression of OmpF, C, and X at high osmolarity, potentially due to differences in OmpR binding sites.
More Related Videos
12:23Analysis of Yersinia enterocolitica Effector Translocation into Host Cells Using Beta-lactamase Effector Fusions
Published on: October 13, 2015
10:18A Fast and Reliable Pipeline for Bacterial Transcriptome Analysis Case study: Serine-dependent Gene Regulation in Streptococcus pneumoniae
Published on: April 25, 2015
Related Concept Videos
Global Regulatory Systems
Plague
Repressible Operon: trp Operon
Operon Model
Prokaryotic Transcriptional Activators and Repressors
Transcription of prokaryotic...
Regulation of Bacterial Virulence