Related Experiment Video
Updated: Jun 4, 2026

A Reporter Assay to Analyze Intronic microRNA Maturation in Mammalian Cells
Published on: June 16, 2022
An evolutionarily conserved, alternatively spliced, intron in the p68/DDX5 DEAD-box RNA helicase gene encodes a novel
Abstract:
The DEAD-box RNA helicase p68 (DDX5) plays important roles in several cellular processes, including transcription, pre-mRNA processing, and microRNA (miRNA) processing. p68 expression is growth and developmentally regulated, and alterations in p68 expression and/or function have been implicated in tumor development. The p68 gene encodes an evolutionarily conserved, alternatively spliced, intron the function of which has to date remained unclear. Although the intron-containing p68 RNA does not appear to yield an alternative p68 protein, it is differentially expressed in cell lines and tissues, indicating regulation of expression. Here we show that the p68 conserved intron encodes a novel putative miRNA, suggesting a previously unknown possible regulatory function for the p68 intron. We show that this miRNA (referred to as p68 miRNA) is processed from the intron via the canonical miRNA-processing pathway and that it associates with the Argonaute protein Ago2. Finally we show that the p68 miRNA suppresses an mRNA bearing complementary target sequences, suggesting that it is functional. These findings suggest a novel mechanism by which alterations in p68 expression may impact on the cell.
Insights
The p68 gene
Area of Science:
- Molecular Biology
- RNA Biology
- Gene Regulation
Background:
- The DEAD-box RNA helicase p68 (DDX5) is crucial for transcription and RNA processing, including microRNA (miRNA) processing.
- Altered p68 expression is linked to tumor development, but the function of an alternatively spliced intron in the p68 gene remained unclear.
Discussion:
- This study reveals that a conserved intron within the p68 gene encodes a novel miRNA, termed p68 miRNA.
- p68 miRNA is processed through the canonical miRNA pathway and interacts with Argonaute protein Ago2.
- The functional significance of this intronic miRNA in regulating gene expression is demonstrated.
Key Insights:
- A novel functional miRNA (p68 miRNA) is encoded within a conserved intron of the p68 (DDX5) gene.
- This intronic miRNA is processed via the canonical miRNA pathway and associates with Ago2.
- p68 miRNA actively suppresses target mRNAs, indicating a functional role in gene regulation.
Outlook:
- This discovery uncovers a new layer of gene regulation involving intronic miRNAs.
- It suggests a novel mechanism through which p68 expression alterations can impact cellular processes and potentially contribute to disease.
- Further research into p68 miRNA's targets and regulatory networks is warranted.
Related Concept Videos
Exon Recombination
Exon shuffling follows “splice frame rules.” Each exon has three reading...
MicroRNAs
MicroRNAs
MicroRNAs
piRNA - Piwi-interacting RNAs
RNA Splicing

